Structure of PDB 5axm Chain B Binding Site BS01

Receptor Information
>5axm Chain B (length=239) Species: 2214 (Methanosarcina acetivorans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TREIYAEMRCIPPVVLRADGRNFKNTLSGLGFEKPYDKTFARAMADTAEL
FIKKSGLSPLFAYTFSDEISFLFTDLPFDGRVEKIDSVVASFLGSALTIK
LRLEEPIAFDSRLVALQKEEIPEYFHRRQLEAWRNFVASWGYYALRNEGM
GRNEAAKYLKRKKESEIHEMLFERGINLATLPSWQRRGVIISKEAREIQG
FNPVSGKEEKSLRRKITQNWEIPKFKSEKGIPFLEKLIN
Ligand information
>5axm Chain P (length=73) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gggauuuagcucaguugggagagcgccagacugaagaucuggagguccug
uguucgauccacagaauccccac
<<<<<<..<<<<........>>>>.<<<<<.......>>>>>.....<<<
<<.......>>>>>>>>>>>...
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5axm Template-dependent nucleotide addition in the reverse (3'-5') direction by Thg1-like protein
Resolution2.21 Å
Binding residue
(original residue number in PDB)		G58 S60 P79 F80 G202 F203 N204 P205 E211 S213 R215 R216
Binding residue
(residue number reindexed from 1)		G56 S58 P77 F78 G200 F201 N202 P203 E209 S211 R213 R214
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0005525 GTP binding
GO:0008193 tRNA guanylyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006400 tRNA modification
GO:0008033 tRNA processing
GO:0099116 tRNA 5'-end processing

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5axm, PDBe:5axm, PDBj:5axm
PDBsum5axm
PubMed27051866
UniProtA0A1C7D1G9

[Back to BioLiP]