Structure of PDB 5a01 Chain B Binding Site BS01

Receptor Information
>5a01 Chain B (length=681) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLASV
LQQQGKLKEALMHYKEAIRIQPTFADAYSNMGNTLKELQDVSGALQCYTR
AIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLA
HCLQIVCDWTDYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLTHDCR
KAIAARHANLCLEKVHVLHKKPYNFLKKLPGRLRIGYLSSDFGNHPTSHL
MQSVPGLHDRSKVEIFCYALSPDDGTTFRHKISRESENFVDLSQIPCNGK
AADKIFNDGIHILVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASF
MDYIITDSVTSPLELAYQYSEKLSYMPHTYFIGDHKQMFPHLKERIIVCV
DNVTVINATDLSPLVENTDVKEIKEVVNKPVEITHKVAELPNTTQIVSMI
ATGQVQTSLNGVVVQNGLIVITTRRQYMLPDDAVVYCNFNQLYMIDPQTL
ESWVEILKNVPKSVLWLLRFPAVGEQNIKKTVSDFGISPDRVIFSNVAAK
EEHVRRGQLADICLDTPLCNGHTTSMDVLWTGTPVVTLPGETLASRVAAS
QLATLGCPELIARTREEYQNIAIRLGTKKEYLKALRAKVWKARVESPLFD
CSQYAKGLEKLFLRMWEKYENGELPDHISAV
Ligand information
Ligand ID12V
InChIInChI=1S/C17H27N3O16P2S/c1-6(22)18-10-13(26)12(25)8(4-21)39-16(10)35-38(31,32)36-37(29,30)33-5-7-11(24)14(27)15(34-7)20-3-2-9(23)19-17(20)28/h2-3,7-8,10-16,21,24-27H,4-5H2,1H3,(H,18,22)(H,29,30)(H,31,32)(H,19,23,28)/t7-,8-,10-,11-,12-,13-,14-,15-,16+/m1/s1
InChIKeyJPRVHSQHWXZSNC-UBDZBXRQSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](S[C@@H]1OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO)O)O
ACDLabs 12.01O=P(OC1SC(C(O)C(O)C1NC(=O)C)CO)(O)OP(=O)(O)OCC3OC(N2C=CC(=O)NC2=O)C(O)C3O
CACTVS 3.370CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)S[CH]1O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O
OpenEye OEToolkits 1.7.6CC(=O)NC1C(C(C(SC1OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)CO)O)O
CACTVS 3.370CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)S[C@@H]1O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O
FormulaC17 H27 N3 O16 P2 S
Name(2S,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate;
URIDINE DIPHOSPHO-5-THIO-N-ACETYLGLUCOSAMINE
ChEMBLCHEMBL3596221
DrugBank
ZINCZINC000098207912
PDB chain5a01 Chain B Residue 2060 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5a01 Dual functionality of O-GlcNAc transferase is required for Drosophila development.
Resolution2.66 Å
Binding residue
(original residue number in PDB)
H537 T598 L691 G692 P694 F732 Q869 L896 A926 K928 H931 H950 T951 D955
Binding residue
(residue number reindexed from 1)
H188 T247 L340 G341 P343 F381 Q491 L518 A548 K550 H553 H572 T573 D577
Annotation score2
Enzymatic activity
Enzyme Commision number 2.4.1.255: protein O-GlcNAc transferase.
External links