Structure of PDB 4u0d Chain B Binding Site BS01

Receptor Information

>4u0d Chain B (length=207) Species: 11698 (Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

PIVQNQMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLN
TMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVHREPRGSDIAGTTSTLQ
EQIGWMTHNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFR
DYVDRFYKTLRAEQASQEVKNAATETLLVQNANPDCKTILKALGPGATLE
EMMTACQ

Ligand information

>4u0d Chain O (length=9) Species: 9606 (Homo sapiens) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

SPSGVFTFG

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	4u0d Host Cofactors and Pharmacologic Ligands Share an Essential Interface in HIV-1 Capsid That Is Lost upon Disassembly.
Resolution	3.0 Å
Binding residue (original residue number in PDB)	N53 N57 M66 K70 I73 T107
Binding residue (residue number reindexed from 1)	N50 N54 M63 K67 I70 T95

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Biological Process
GO:0016032	viral process

View graph for
Biological Process

External links

PDB	RCSB:4u0d, PDBe:4u0d, PDBj:4u0d
PDBsum	4u0d
PubMed	25356722
UniProt	P12493\|GAG_HV1N5 Gag polyprotein (Gene Name=gag)

[Back to BioLiP]