Structure of PDB 4pz2 Chain B Binding Site BS01

Receptor Information

>4pz2 Chain B (length=494) Species: 4577 (Zea mays)

LLFDVPEIRFTKLFINGSFVDAVSGRTFDTRDPRTGGVIASVAEADKEDV
DLAVRAARAAFDHGEWPRMSGSERGRIMARLADLVEEHAGELAALESLDA
GKHPAVTRAVDVGNAAGSLRYFAGAADKIHGETLKMPGQFQGHTLREPLG
VAGVIIPWNFPSTMFAVKVAPALAAGCALVVKPAEQTPLSALYLAQLAKQ
AGVPDGVINVVPGFGPTAGAALASHMDVDMVSFTGSTEVGRLIMKASAES
NLKPVYLELGGKSPLIVFDDADLDMAVELAVGASFFNKGEACVAASRVYV
QERVYDRFEERLAERMRSWVVGDPFSDPRADQGPQVDKAQYERVLSYIDH
GKREGATLLTGGRPCAPEGKGYYIEPTVFTNVKEDMIIAKEEIFGPVMCL
MKFKTVEEAIARANDTRYGLGAGVVTRDLDVANRVVRSVRAGVVWVNCYF
AMGSDCPFGGRKMSGFGKDEGMHALDKYLAVKSVVTPLRASPWI

Ligand information

• Ligand ID: NAD
• InChI: InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
• InChIKey: BAWFJGJZGIEFAR-NNYOXOHSSA-N
• SMILES:
  CACTVS 3.341: NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
  OpenEye OEToolkits 1.5.0: c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
  CACTVS 3.341: NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
  OpenEye OEToolkits 1.5.0: c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
• Formula: C21 H27 N7 O14 P2
• Name: NICOTINAMIDE-ADENINE-DINUCLEOTIDE
• ChEMBL: CHEMBL1234613
• DrugBank: DB14128
• PDB chain: 4pz2 Chain B Residue 602

Receptor-Ligand Complex Structure

Structure summary

• PDB: 4pz2 Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7.
• Resolution: 2.4 Å
• Binding residue (original residue number in PDB): I180 I181 P182 W183 N184 M189 K207 A209 E210 G240 G244 F258 T259 G260 S261 V264 E283 L284 C317 E417 F419
• Binding residue (residue number reindexed from 1): I155 I156 P157 W158 N159 M164 K182 A184 E185 G215 G219 F233 T234 G235 S236 V239 E258 L259 C292 E392 F394
• Annotation score: 4

Enzymatic activity

• Catalytic site (original residue number in PDB): N184 K207 E283 C317 E417 D494
• Catalytic site (residue number reindexed from 1): N159 K182 E258 C292 E392 D469
• Enzyme Commision number: 1.2.1.3: aldehyde dehydrogenase (NAD(+)).

Gene Ontology

Molecular Function

• GO:0000166 nucleotide binding
• GO:0004029 aldehyde dehydrogenase (NAD+) activity
• GO:0016491 oxidoreductase activity
• GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

External links

• PDB: RCSB:4pz2, PDBe:4pz2, PDBj:4pz2
• PDBsum: 4pz2
• PubMed: 25734422
• UniProt: W8SZG1