Structure of PDB 4p9u Chain B Binding Site BS01
Receptor Information
>4p9u Chain B (length=272) Species:
666
(Vibrio cholerae) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
KSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRL
ARDGWLTIQHGKPTKVNQFMETSGLHILDTLMTLDAENATSIVEDLLAAR
TNISPIFMRYAFKLNKESAERIMINVIESCEALVNAPSWDAFIAASPYAE
KIQQHVKEDSEKDELKRQEILIAKTFNFYDYMLFQRLAFHSGNQIYGLIF
NGLKKLYDRVGSYYFSNPQARELAMEFYRQLLAVCQSGEREHLPQVIRQY
GIASGHIWNQMKMTLPSNFTED
Ligand information
>4p9u Chain C (length=31) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
cttaggcaactggtcaaaccagaacataaaa
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
4p9u
The 40-residue insertion in Vibrio cholerae FadR facilitates binding of an additional fatty acyl-CoA ligand.
Resolution
3.208 Å
Binding residue
(original residue number in PDB)
A33 E34 R35 R45 R49 I63 H65 G66 K67 T69
Binding residue
(residue number reindexed from 1)
A28 E29 R30 R40 R44 I58 H60 G61 K62 T64
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0000062
fatty-acyl-CoA binding
GO:0003677
DNA binding
GO:0003700
DNA-binding transcription factor activity
Biological Process
GO:0006355
regulation of DNA-templated transcription
GO:0006631
fatty acid metabolic process
GO:0019217
regulation of fatty acid metabolic process
GO:0071072
negative regulation of phospholipid biosynthetic process
Cellular Component
GO:0005737
cytoplasm
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:4p9u
,
PDBe:4p9u
,
PDBj:4p9u
PDBsum
4p9u
PubMed
25607896
UniProt
Q9KQU8
|FADR_VIBCH Fatty acid metabolism regulator protein (Gene Name=fadR)
[
Back to BioLiP
]