Structure of PDB 4ok2 Chain B Binding Site BS01

Receptor Information
>4ok2 Chain B (length=705) Species: 203122 (Saccharophagus degradans 2-40) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNLIVTEQDVANIAASWESYDAYAEQLNADKTNLDAFMAEGVVVPMPKDA
GGGYTHEQHKRNYKAIRNAGFLYQVTGDEKYLTFAKDLLLAYAKMYPSLG
EHPNRKEQSPGRLFWQSLNEAVWLVYSIQGYDAIIDGLAAEEKQEIESGV
FLPMAKFLSVESPETFNKIHNHGTWAVAAVGMTGYVLGNDELVEISLMGL
DKTGKAGFMKQLDKLFSPDGYYTEGPYAQRYALMPFIWFAKAIETNEPER
KIFEYRNNILLKAVYTTIDLSYAGYFFPINDALKDKGIDTVELVHALAIV
YSITGDNTLLDIAQEQGRISLTGDGLKVAKAVGEGLTQPYNYRSILLGDG
ADGDQGALSIHRLGEGHNHMALVAKNTSQGMGHGHFDKLNWLLYDNGNEI
VTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHNTLVVNEQSHFYGDVT
TADLHHPEVLSFYSGEDYQLSSAKEANAYDGVEFVRSMLLVNVPSLEHPI
VVDVLNVSADKASTFDLPLYFNGQIIDFSFKVKDNKNVMKMLGKRNGYQH
LWLRNTAPVGDASERATWILDDRFYSYAFVTSTPSKKQNVLIAELGANDP
NYNLRQQQVLIRRVEKAKQASFVSVLEPHGKYDGSLETTSGAYSNVKSVK
HVSENGKDVVVVDLKDGSNVVVALSYNANSEQVHKVNAGEEAIEWKGFSS
VVVRR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain4ok2 Chain B Residue 801 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4ok2 Structure of a PL17 Family Alginate Lyase Demonstrates Functional Similarities among Exotype Depolymerases.
Resolution2.45 Å
Binding residue
(original residue number in PDB)		H415 D433 H464
Binding residue
(residue number reindexed from 1)		H385 D403 H434
Annotation score4
Enzymatic activity
Enzyme Commision number 4.2.2.26: oligo-alginate lyase.
Gene Ontology
Cellular Component
GO:0042597 periplasmic space

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:4ok2, PDBe:4ok2, PDBj:4ok2
PDBsum4ok2
PubMed24478312
UniProtQ21FJ0|EALGL_SACD2 Exo-oligoalginate lyase (Gene Name=alg17C)

[Back to BioLiP]