Structure of PDB 4ijs Chain B Binding Site BS01

Receptor Information

>4ijs Chain B (length=232) Species: 35304 (Bunyamwera virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

IELEFHDVAANTSSTFDPEVAYANFKRVHTTGLSYDHIRIFYIKGREIKT
SLAKRSEWEVTLNLGGWKITVYNTNFPGNRNSPVPDDGLTLHRLSGFLAR
YLLEKMLKVSEPEKLIIKSKIINPLAEKNGITWNDGEEVYLSFFPGSEMF
LGTFRFYPLAIGIYKVQRKEMEPKYLEKTMRQRYMGLEAATWTVSKLTEV
QSALTVVSSLGWKKTNVSAAARDFLAKFGINM

Ligand information

>4ijs Chain F (length=9) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

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Receptor-Ligand Complex Structure

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Structure summary

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PDB	4ijs Bunyamwera virus possesses a distinct nucleocapsid protein to facilitate genome encapsidation
Resolution	3.2 Å
Binding residue (original residue number in PDB)	S14 D18 P19 I44 R47 K50 P84 I123 P125 L126 P146 K166 Y176 R182 R184 N217
Binding residue (residue number reindexed from 1)	S13 D17 P18 I43 R46 K49 P83 I122 P124 L125 P145 K165 Y175 R181 R183 N216

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding

	Biological Process
GO:0039657	symbiont-mediated suppression of host gene expression

	Cellular Component
GO:0019013	viral nucleocapsid
GO:0019029	helical viral capsid
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4ijs, PDBe:4ijs, PDBj:4ijs
PDBsum	4ijs
PubMed	23569257
UniProt	P16495\|NCAP_BUNYW Nucleoprotein (Gene Name=N)

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