Structure of PDB 4gvs Chain B Binding Site BS01

Receptor Information
>4gvs Chain B (length=315) Species: 224325 (Archaeoglobus fulgidus DSM 4304) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLSVNEIAAEIVEDMLDYEEELRIESKKLENGAIVVDCGVNVPGSYDAGI
MYTQVCMGGLADVDIVVDTINDVPFAFVTEYTDHPAIACLGSQKAGWQIK
VDKYFAMGSGPARALALKPKKTYERIEYEDDADVAVIALEANQLPDEKVM
EFIAKECDVDPENVYALVAPTASIVGSVQISGRIVQTAIFKMNEIGYDPK
LIVSGAGRCPISPILENDLKAMGSTNDSMMYYGSVFLTVKKYDEILKNVP
SCTSRDYGKPFYEIFKAANYDFYKIDPNLFAPAQIAVNDLETGKTYVHGK
LNAEVLFQSYQIVLE
Ligand information
Ligand IDF4M
InChIInChI=1S/C31H45N6O17P/c1-13(22-14(2)34-27-23(37(22)12-38)28(46)36-31(32)35-27)33-16-5-3-15(4-6-16)9-17(39)24(43)18(40)10-51-30-26(45)25(44)20(53-30)11-52-55(49,50)54-19(29(47)48)7-8-21(41)42/h3-6,12-14,17-20,22,24-26,30,33,39-40,43-45H,7-11H2,1-2H3,(H,41,42)(H,47,48)(H,49,50)(H4,32,34,35,36,46)/t13-,14?,17+,18-,19-,20-,22?,24+,25-,26-,30+/m1/s1
InChIKeyRMPHWTMYCVTPKB-DSWDSYRTSA-N
SMILES
SoftwareSMILES
CACTVS 3.370C[C@@H](Nc1ccc(C[C@H](O)[C@H](O)[C@H](O)CO[C@H]2O[C@H](CO[P](O)(=O)O[C@H](CCC(O)=O)C(O)=O)[C@@H](O)[C@H]2O)cc1)[C@H]3[C@@H](C)NC4=C(N3C=O)C(=O)N=C(N)N4
ACDLabs 12.01O=C2N=C(N)NC=1NC(C)C(N(C=O)C=12)C(Nc3ccc(cc3)CC(O)C(O)C(O)COC4OC(C(O)C4O)COP(=O)(OC(C(=O)O)CCC(=O)O)O)C
CACTVS 3.370C[CH](Nc1ccc(C[CH](O)[CH](O)[CH](O)CO[CH]2O[CH](CO[P](O)(=O)O[CH](CCC(O)=O)C(O)=O)[CH](O)[CH]2O)cc1)[CH]3[CH](C)NC4=C(N3C=O)C(=O)N=C(N)N4
OpenEye OEToolkits 1.7.6CC1C(N(C2=C(N1)NC(=NC2=O)N)C=O)[C@@H](C)Nc3ccc(cc3)C[C@@H]([C@@H]([C@@H](CO[C@@H]4[C@@H]([C@@H]([C@H](O4)COP(=O)(O)O[C@H](CCC(=O)O)C(=O)O)O)O)O)O)O
OpenEye OEToolkits 1.7.6CC1C(N(C2=C(N1)NC(=NC2=O)N)C=O)C(C)Nc3ccc(cc3)CC(C(C(COC4C(C(C(O4)COP(=O)(O)OC(CCC(=O)O)C(=O)O)O)O)O)O)O
FormulaC31 H45 N6 O17 P
Name1-[4-({(1R)-1-[(6S,7R)-2-amino-5-formyl-7-methyl-4-oxo-1,4,5,6,7,8-hexahydropteridin-6-yl]ethyl}amino)phenyl]-1-deoxy-5 -O-{5-O-[(R)-{[(1R)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol;
N5-formyl-tetrahydromethanopterin
ChEMBL
DrugBank
ZINC
PDB chain4gvs Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4gvs Structure and catalytic mechanism of N(5),N(10)-methenyl-tetrahydromethanopterin cyclohydrolase.
Resolution1.75 Å
Binding residue
(original residue number in PDB)
K94 A95 M107 K121 E140 I180 R183 Q186 F190 E194 M222 N226 F272 P277 F280
Binding residue
(residue number reindexed from 1)
K94 A95 M107 K121 E140 I180 R183 Q186 F190 E194 M222 N226 F272 P277 F280
Annotation score4
Enzymatic activity
Enzyme Commision number 3.5.4.27: methenyltetrahydromethanopterin cyclohydrolase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0018759 methenyltetrahydromethanopterin cyclohydrolase activity
Biological Process
GO:0006730 one-carbon metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:4gvs, PDBe:4gvs, PDBj:4gvs
PDBsum4gvs
PubMed23013430
UniProtO28344|MCH_ARCFU Methenyltetrahydromethanopterin cyclohydrolase (Gene Name=mch)

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