Structure of PDB 4gah Chain B Binding Site BS01

Receptor Information
>4gah Chain B (length=195) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LKDCSVPNPSWNKDLRLLFDQFMKKCEDGSWKRLPSYKRTPTEWIQDFKT
HFLDPKSQAQLFTRSFDDGLGFEYVMFYNDIEKRMVCLFQGGPYLEGPPG
FIHGGAIATMIDATVGMCAMMAGGIVMTANLNINYKRPIPLCSVVMINSQ
LDKVEGRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAKSLTLEHH
Ligand information
Ligand ID0ET
InChIInChI=1S/C32H58N7O17P3S/c1-4-5-6-7-8-9-10-11-21(40)17-60-15-14-34-23(41)12-13-35-30(44)27(43)32(2,3)18-53-59(50,51)56-58(48,49)52-16-22-26(55-57(45,46)47)25(42)31(54-22)39-20-38-24-28(33)36-19-37-29(24)39/h19-22,25-27,31,40,42-43H,4-18H2,1-3H3,(H,34,41)(H,35,44)(H,48,49)(H,50,51)(H2,33,36,37)(H2,45,46,47)/t21-,22-,25-,26-,27+,31-/m1/s1
InChIKeyLVZITIAGAKKXBV-XBRBJHMKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCCCCCCCC[C@H](CSCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)O
CACTVS 3.370CCCCCCCCC[C@@H](O)CSCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23
CACTVS 3.370CCCCCCCCC[CH](O)CSCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 1.7.6CCCCCCCCCC(CSCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O)O
ACDLabs 12.01O=C(NCCSCC(O)CCCCCCCCC)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O
FormulaC32 H58 N7 O17 P3 S
Name[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3R)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-[2-[(2R)-2-oxidanylundecyl]sulfanylethylamino]propyl]amino]butyl] hydrogen phosphate;
undecan-2-one-CoA
ChEMBL
DrugBank
ZINCZINC000263620722
PDB chain4gah Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4gah Correlation of structure and function in the human hotdog-fold enzyme hTHEM4.
Resolution2.3 Å
Binding residue
(original residue number in PDB)
P147 H152 G153 N183 Y184 K185 R186 P187
Binding residue
(residue number reindexed from 1)
P98 H103 G104 N134 Y135 K136 R137 P138
Annotation score3
Binding affinityMOAD: Ki=0.8uM
PDBbind-CN: -logKd/Ki=6.10,Kd=0.8uM
Enzymatic activity
Enzyme Commision number 3.1.2.2: palmitoyl-CoA hydrolase.
External links
PDB RCSB:4gah, PDBe:4gah, PDBj:4gah
PDBsum4gah
PubMed22871024
UniProtQ5T1C6|THEM4_HUMAN Acyl-coenzyme A thioesterase THEM4 (Gene Name=THEM4)

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