Structure of PDB 4fvc Chain B Binding Site BS01
Receptor Information
>4fvc Chain B (length=149) Species:
655816
(Bacillus spizizenii str. W23) [
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MKVYITYGTADFLKTIVKKHPSENILLMQGQENAILIHETSGDTVFQAPH
AYEVIDQVGEIKHPGFAVLANIAVTQEGRPLFENKFKNRAGKVENEPGFE
AIRVLRPLDSDTYVILTLWETERAFQDWQQSDSYSIFSRPSYVTTYFAV
Ligand information
Ligand ID
HEM
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;
InChIKey
KABFMIBPWCXCRK-RGGAHWMASA-L
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Fe]36[N]7=C(C=C8N6C(=C5)C(=C8C)C=C)C(=C(C7=C2)C)C=C)C)CCC(=O)O
CACTVS 3.385
CC1=C(CCC(O)=O)C2=Cc3n4[Fe]5|6|N2=C1C=c7n5c(=CC8=N|6C(=Cc4c(C)c3CCC(O)=O)C(=C8C=C)C)c(C)c7C=C
ACDLabs 12.01
C=1c3c(c(c4C=C5C(=C(C=6C=C7C(=C(C8=CC=2C(=C(C=1N=2[Fe](n34)(N5=6)N78)CCC(=O)O)C)\C=C)C)\C=C)C)C)CCC(=O)O
Formula
C34 H32 Fe N4 O4
Name
PROTOPORPHYRIN IX CONTAINING FE;
HEME
ChEMBL
DrugBank
DB18267
ZINC
PDB chain
4fvc Chain B Residue 201 [
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Receptor-Ligand Complex Structure
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PDB
4fvc
Crystal structure of HmoB with Heme
Resolution
1.75 Å
Binding residue
(original residue number in PDB)
A70 I72 K85 F86 R89 A90 G91 K92 V93 W128 Y134 F153 S157 V159
Binding residue
(residue number reindexed from 1)
A70 I72 K85 F86 R89 A90 G91 K92 V93 W128 Y134 F137 S141 V143
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0046872
metal ion binding
View graph for
Molecular Function
External links
PDB
RCSB:4fvc
,
PDBe:4fvc
,
PDBj:4fvc
PDBsum
4fvc
PubMed
UniProt
E0TXX3
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