Structure of PDB 4f38 Chain B Binding Site BS01

Receptor Information
>4f38 Chain B (length=192) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TAEQLAQIAAENVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVS
ADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRI
KISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPM
EEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD
Ligand information
Ligand IDGER
InChIInChI=1S/C20H34/c1-7-18(4)12-9-14-20(6)16-10-15-19(5)13-8-11-17(2)3/h7,11,14-15H,8-10,12-13,16H2,1-6H3/b18-7+,19-15+,20-14+
InChIKeyHSOYJGBJQAKCNA-CAIKYXSQSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04C(=C/CCC(=C/C)/C)(\CC/C=C(/CC/C=C(\C)C)C)C
OpenEye OEToolkits 1.5.0C\C=C(/C)\CC\C=C(/C)\CC\C=C(/C)\CCC=C(C)C
CACTVS 3.341
OpenEye OEToolkits 1.5.0		CC=C(C)CCC=C(C)CCC=C(C)CCC=C(C)C
CACTVS 3.341C\C=C(/C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C
FormulaC20 H34
NameGERAN-8-YL GERAN
ChEMBL
DrugBank
ZINCZINC000014880577
PDB chain4f38 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4f38 Quantitative Analysis of Prenylated RhoA Interaction with Its Chaperone, RhoGDI.
Resolution2.8 Å
Binding residue
(original residue number in PDB)		L75 Y110 Q130 I139 D140 P166 W194
Binding residue
(residue number reindexed from 1)		L63 Y98 Q118 I127 D128 P154 W182
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005094 Rho GDP-dissociation inhibitor activity
GO:0005096 GTPase activator activity
GO:0005515 protein binding
Biological Process
GO:0007266 Rho protein signal transduction
GO:0032880 regulation of protein localization
GO:0035023 regulation of Rho protein signal transduction
GO:0071526 semaphorin-plexin signaling pathway
GO:0098693 regulation of synaptic vesicle cycle
Cellular Component
GO:0001772 immunological synapse
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016020 membrane
GO:0098685 Schaffer collateral - CA1 synapse

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:4f38, PDBe:4f38, PDBj:4f38
PDBsum4f38
PubMed22628549
UniProtQ99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 (Gene Name=Arhgdia)

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