Structure of PDB 4c11 Chain B Binding Site BS01

Receptor Information
>4c11 Chain B (length=603) Species: 12637 (Dengue virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PETPNMDVIGERIKRIKEEHNSTWHYDDENPYKTWAYHGSYEVKATGSAS
SMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTPRPLP
GTRKVMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNAAMAANQWDSAK
AAVEDEEFWKLVDRERELHKLGKCGSCVYNMMASRAIWYMWLGVRYLEFE
ALGFLNEDHWFSRENSYSGVEGEGLHKLGYILRDISKIPGGAMYADDTAG
WDTRITEDDLHNEEKIIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTPTG
TVMDIISRKDQRGSGQVGTYGLNTFTNMEAQLVRQMEGEGVLTKADLENP
HLLEKKITQWLETKGVERLKRMAISGDDCVVKPIDDRFANALLALNDMGK
VRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQDELIG
RARISQGAGWSLRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVH
WVPTSRTTWSIHAHHQWMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENV
PYLGKREDQWCGSLIGLTSRATWAQNIPTAIQQVRSLIGNEEFLDYMPSM
KRF
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain4c11 Chain B Residue 1890 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4c11 A Crystal Structure of the Dengue Virus Ns5 Polymerase Delineates Inter-Domain Amino Acids Residues that Enhance its Thermostability and De Novo Initiation Activities.
Resolution2.6 Å
Binding residue
(original residue number in PDB)		H712 H714 C728 C847
Binding residue
(residue number reindexed from 1)		H426 H428 C442 C561
Annotation score1
Enzymatic activity
Enzyme Commision number 2.1.1.56: mRNA (guanine-N(7))-methyltransferase.
2.1.1.57: methyltransferase cap1.
2.7.7.48: RNA-directed RNA polymerase.
3.4.21.91: flavivirin.
3.6.1.15: nucleoside-triphosphate phosphatase.
3.6.4.13: RNA helicase.
Gene Ontology
Molecular Function
GO:0003968 RNA-dependent RNA polymerase activity
GO:0005524 ATP binding
Biological Process
GO:0039694 viral RNA genome replication

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Molecular Function
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Biological Process
External links
PDB RCSB:4c11, PDBe:4c11, PDBj:4c11
PDBsum4c11
PubMed24025331
UniProtQ6YMS4|POLG_DEN3S Genome polyprotein (Gene Name=pol)

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