Structure of PDB 4aap Chain B Binding Site BS01

Receptor Information

>4aap Chain B (length=233) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MLEKTVPRLHRPSLQHFREQFLVPGRPVILKGVADHWPCMQKWSLEYIQE
IAGCRTVPVEVGSRYTDEEWSQTLMTVNEFISKYIVNRDVGYLAQHQLFD
QIPELKQDISIPDYCSLGDGEEEEITINAWFGPQGTISPLHQDPQQNFLV
QVMGRKYIRLYSPQESGALYPHDTHNTSQVDVENPDLEKFPKFAKAPFLS
CILSPGEILFIPVKYWHYVRALDLSFSVSFWWS

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

4aap Chain B Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	4aap Crystal Structure of Jmjd5 Domain of Human Lysine- Specific Demethylase 8 (Kdm8) in Complex with N- Oxalylglycine (Nog)
Resolution	2.6 Å
Binding residue (original residue number in PDB)	H359 D361 H438
Binding residue (residue number reindexed from 1)	H141 D143 H217
Annotation score	1

Enzymatic activity

Enzyme Commision number

1.14.11.73: [protein]-arginine 3-hydroxylase.
3.4.-.-

External links

PDB	RCSB:4aap, PDBe:4aap, PDBj:4aap
PDBsum	4aap
PubMed
UniProt	Q8N371\|KDM8_HUMAN Bifunctional peptidase and arginyl-hydroxylase JMJD5 (Gene Name=KDM8)

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