Structure of PDB 3zg8 Chain B Binding Site BS01

Receptor Information
>3zg8 Chain B (length=458) Species: 1639 (Listeria monocytogenes) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YSKDEIMEMYLNRSYFGNGEWGVENASLKYFGKSAADLNIPEAATIAGLL
QAPSAYDPYQHIDKATNRRNMVLNAMVETGTISKAEGDKYKATKIVLNDQ
SKDPLANKYPWYVDAVINEAVNEADITQDEIMQKGYKIYTELDQNYQTSL
ENVYNNDGLFPSNANDGTLVQSGAVLMDPATGGIRALVGGRGEHVFRGFN
RATQMKAQPGSTMKPLAVYTPALQSGYDVDSMLKDEKITYKGNYTPTNVG
GVYSGEVPMYKAVANSINAPAVWLLDQIGIDKGVKSVEKFGITVPEKDRT
LGLALGGMSKGASPVEMATAYATFANNGAKPESHIITKIVDPSGNTVYEN
VPKTKQIISETVSNEMTSMLLDVINTGTGQSAAVSGHEMAGKTGSTQVPF
DDTSGTKDQWFVGYTPNLVGAVWMGYDKTDKEHYLTTTSSAGVSSLAHYV
MNSGLQYQ
Ligand information
Ligand IDAIX
InChIInChI=1S/C16H21N3O4S/c1-16(2)12(15(22)23)19-14(24-16)10(8-20)18-13(21)11(17)9-6-4-3-5-7-9/h3-8,10-12,14,19H,17H2,1-2H3,(H,18,21)(H,22,23)/t10-,11-,12+,14-/m1/s1
InChIKeyWHAIWIUXAXKSOT-NRWUCQMLSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC1(C(NC(S1)C(C=O)NC(=O)C(c2ccccc2)N)C(=O)O)C
ACDLabs 10.04O=C(NC(C=O)C1SC(C(N1)C(=O)O)(C)C)C(c2ccccc2)N
CACTVS 3.341CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC(=O)[CH](N)c2ccccc2)C=O
OpenEye OEToolkits 1.5.0CC1([C@@H](N[C@H](S1)[C@@H](C=O)NC(=O)[C@@H](c2ccccc2)N)C(=O)O)C
CACTVS 3.341CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC(=O)[C@H](N)c2ccccc2)C=O
FormulaC16 H21 N3 O4 S
Name(2R,4S)-2-[(1R)-1-{[(2R)-2-amino-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid;
AMPICILLIN (open form)
ChEMBL
DrugBank
ZINCZINC000016051985
PDB chain3zg8 Chain B Residue 800 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3zg8 Crystal Structures of Bifunctional Penicillin-Binding Protein 4 from Listeria Monocytogenes.
Resolution2.094 Å
Binding residue
(original residue number in PDB)
S394 V432 S449 N451 T576 S578 Q580 S623
Binding residue
(residue number reindexed from 1)
S211 V249 S266 N268 T393 S395 Q397 S440
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.129: Transferred entry: 2.4.99.28.
Gene Ontology
Molecular Function
GO:0008658 penicillin binding

View graph for
Molecular Function
External links
PDB RCSB:3zg8, PDBe:3zg8, PDBj:3zg8
PDBsum3zg8
PubMed23669378
UniProtQ8Y547

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