Structure of PDB 3wzo Chain B Binding Site BS01

Receptor Information
>3wzo Chain B (length=124) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GPAEAGITGTWSDQLGDTFIVTAGADGALTGTYESAVGNAESRYVLTGRY
DSAPATDGSGTALGWTVAWKNNSKNAHSATTWSGQYVGGADAKINTQWLL
TSGTTNANAWKSTLVGHDTFTKVK
Ligand information
Ligand IDZOE
InChIInChI=1S/C16H27N3O5S/c20-13(17-9-5-1-2-8-14(21)22)7-4-3-6-12-15-11(10-25(12)24)18-16(23)19-15/h11-12,15H,1-10H2,(H,17,20)(H,21,22)(H2,18,19,23)/t11-,12-,15-,25-/m0/s1
InChIKeyWVGTVVXHODUEJR-XNCOPMLMSA-N
SMILES
SoftwareSMILES
CACTVS 3.385OC(=O)CCCCCNC(=O)CCCC[CH]1[CH]2NC(=O)N[CH]2C[S]1=O
OpenEye OEToolkits 1.7.6C1[C@H]2[C@@H]([C@@H]([S@]1=O)CCCCC(=O)NCCCCCC(=O)O)NC(=O)N2
CACTVS 3.385OC(=O)CCCCCNC(=O)CCCC[C@H]1[C@H]2NC(=O)N[C@H]2C[S@]1=O
OpenEye OEToolkits 1.7.6C1C2C(C(S1=O)CCCCC(=O)NCCCCCC(=O)O)NC(=O)N2
ACDLabs 12.01O=S2C(C1NC(=O)NC1C2)CCCCC(=O)NCCCCCC(=O)O
FormulaC16 H27 N3 O5 S
Name6-({5-[(3aS,4S,5S,6aR)-5-oxido-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid
ChEMBL
DrugBank
ZINC
PDB chain3wzo Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3wzo Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
Resolution1.5 Å
Binding residue
(original residue number in PDB)
D27 Y43 S45 V47 G48 N49 W79 S88 T90 W108 L110
Binding residue
(residue number reindexed from 1)
D17 Y33 S35 V37 G38 N39 W69 S78 T80 W98 L100
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:3wzo, PDBe:3wzo, PDBj:3wzo
PDBsum3wzo
PubMed25645976
UniProtP22629|SAV_STRAV Streptavidin

[Back to BioLiP]