Structure of PDB 3rq1 Chain B Binding Site BS01

Receptor Information
>3rq1 Chain B (length=414) Species: 479436 (Veillonella parvula DSM 2008) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSVAAKHAKGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGN
LVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIR
SIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYS
LFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDS
ILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILT
CVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICR
PAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVGLPMLP
YRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGL
AEKIYNAMKSLGKL
Ligand information
Ligand IDOAA
InChIInChI=1S/C4H4O5/c5-2(4(8)9)1-3(6)7/h1H2,(H,6,7)(H,8,9)/p-1
InChIKeyKHPXUQMNIQBQEV-UHFFFAOYSA-M
SMILES
SoftwareSMILES
ACDLabs 10.04[O-]C(=O)CC(=O)C(=O)O
OpenEye OEToolkits 1.5.0C(C(=O)C(=O)O)C(=O)[O-]
CACTVS 3.341OC(=O)C(=O)CC([O-])=O
FormulaC4 H3 O5
NameOXALOACETATE ION
ChEMBL
DrugBankDB02637
ZINC
PDB chain3rq1 Chain B Residue 422 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3rq1 Crystal Structure of Aminotransferase Class I and II from Veillonella parvula
Resolution2.2 Å
Binding residue
(original residue number in PDB)		W133 K259 R267
Binding residue
(residue number reindexed from 1)		W132 K258 R266
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Wed Dec 18 14:40:52 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '3rq1', asym_id = 'B', bs = 'BS01', title = 'Crystal Structure of Aminotransferase Class I and II from Veillonella parvula'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='3rq1', asym_id='B', bs='BS01', title='Crystal Structure of Aminotransferase Class I and II from Veillonella parvula')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0006520,0008483,0009058,0030170', uniprot = '', pdbid = '3rq1', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0006520,0008483,0009058,0030170', uniprot='', pdbid='3rq1', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>