Structure of PDB 3qib Chain B Binding Site BS01

Receptor Information
>3qib Chain B (length=165) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SRPWFLEYCKSECHFYNGTQRVRLLVRYFYNLEENLRFDSDVGEFRAVTE
LGRPDAENWNSQPEFLEQKRAEVDTVCRHNYEIFDNFLVPRRVEPTVTVY
PLLVCSVSDFYPGNIEVRWNGKEEKTGIVSTGLVRNGDWTFQTLVMLETV
TCQVEHPSLTDPVTV
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3qib Structural basis of specificity and cross-reactivity in T cell receptors specific for cytochrome c-I-E(k).
Resolution2.7 Å
Binding residue
(original residue number in PDB)		E9 C11 S13 Y30 D57 N60 W61 E74 V78 H81 N82 I85 F86
Binding residue
(residue number reindexed from 1)		E7 C9 S11 Y28 D55 N58 W59 E72 V76 H79 N80 I83 F84
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006955 immune response
GO:0019882 antigen processing and presentation
Cellular Component
GO:0016020 membrane
GO:0042613 MHC class II protein complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3qib, PDBe:3qib, PDBj:3qib
PDBsum3qib
PubMed21490152
UniProtP04230|HB21_MOUSE H-2 class II histocompatibility antigen, E-B beta chain (Gene Name=H2-Eb1)

[Back to BioLiP]