Structure of PDB 3oca Chain B Binding Site BS01

Receptor Information
>3oca Chain B (length=179) Species: 205920 (Ehrlichia chaffeensis str. Arkansas) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQ
VGVHKRILVMNVPEEFEDDKIEGYELYGGPYCIINPKIVDISQEKVKLKE
GCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLN
GTVFLKYLSKFKRDFAIEKVKKKERTDLI
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain3oca Chain B Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB3oca Crystal structure of peptide deformylase from Ehrlichia chaffeensis
Resolution2.4 Å
Binding residue
(original residue number in PDB)		C111 H153 H157
Binding residue
(residue number reindexed from 1)		C102 H144 H148
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G46 Q51 C111 L112 H153 E154 H157
Catalytic site (residue number reindexed from 1) G45 Q50 C102 L103 H144 E145 H148
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:3oca, PDBe:3oca, PDBj:3oca
PDBsum3oca
PubMed
UniProtQ2GI30

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