Structure of PDB 3nzp Chain B Binding Site BS01

Receptor Information
>3nzp Chain B (length=591) Species: 192222 (Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYKGPLLLR
FPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKL
GKDYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMG
HNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSKFGLTSTELIEA
VNLLKENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAK
NLKAINLGGGLAVEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLE
PDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYD
LYKSIKPSNALEYLHDSIDHLESILTLFDLGYVDLQDRSNAEILTHLITK
KAILLLGVQERYLVNFSLFQSMPDFWGLEQNFPIMPLDRLDEEPTRSASI
WDITCDSDGEISYSKDKPLFLHDVDVEKENYFLGFFLVGAYQEVLGMKHN
LFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYDIHAIMDILNERI
SNSKLVNDKQKKHILGELYLFLNDNGYLKSIGVLEHHHHHH
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain3nzp Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3nzp Structures of bacterial biosynthetic arginine decarboxylases.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		K86 N132 H231 H233 S236 G273 E320 G322 Y519
Binding residue
(residue number reindexed from 1)		K86 N132 H217 H219 S222 G259 E306 G308 Y491
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.1.19: arginine decarboxylase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008792 arginine decarboxylase activity
GO:0016831 carboxy-lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0006527 arginine catabolic process
GO:0008295 spermidine biosynthetic process
GO:0033388 putrescine biosynthetic process from arginine

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:3nzp, PDBe:3nzp, PDBj:3nzp
PDBsum3nzp
PubMed21139196
UniProtQ0PAC6

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