Structure of PDB 3mwl Chain B Binding Site BS01

Receptor Information
>3mwl Chain B (length=207) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTG
KTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLK
VVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVL
DEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNP
VLINVIK
Ligand information
Ligand ID8OX
InChIInChI=1S/C10H13N5O5/c11-7-4-8(13-2-12-7)15(10(19)14-4)9-6(18)5(17)3(1-16)20-9/h2-3,5-6,9,16-18H,1H2,(H,14,19)(H2,11,12,13)/t3-,5-,6-,9-/m1/s1
InChIKeyUEHOMUNTZPIBIL-UUOKFMHZSA-N
SMILES
SoftwareSMILES
CACTVS 3.370Nc1ncnc2N([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C(=O)Nc12
OpenEye OEToolkits 1.7.0c1nc(c2c(n1)N(C(=O)N2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N
OpenEye OEToolkits 1.7.0c1nc(c2c(n1)N(C(=O)N2)C3C(C(C(O3)CO)O)O)N
ACDLabs 12.01O=C2Nc1c(ncnc1N2C3OC(C(O)C3O)CO)N
CACTVS 3.370Nc1ncnc2N([CH]3O[CH](CO)[CH](O)[CH]3O)C(=O)Nc12
FormulaC10 H13 N5 O5
Name6-azanyl-9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]-7H-purin-8-one;
8-oxoadenosine
ChEMBLCHEMBL1614817
DrugBank
ZINCZINC000005163021
PDB chain3mwl Chain B Residue 209 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3mwl Changing nucleotide specificity of the DEAD-box helicase Hera abrogates communication between the Q-motif and the P-loop.
Resolution1.6 Å
Binding residue
(original residue number in PDB)
L21 E28 G48 G50 T52 E91
Binding residue
(residue number reindexed from 1)
L21 E28 G48 G50 T52 E91
Annotation score1
Binding affinityMOAD: Kd=579uM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003724 RNA helicase activity
GO:0005524 ATP binding

View graph for
Molecular Function
External links
PDB RCSB:3mwl, PDBe:3mwl, PDBj:3mwl
PDBsum3mwl
PubMed21391900
UniProtQ72GF3

[Back to BioLiP]