Structure of PDB 3mjs Chain B Binding Site BS01
Receptor Information
>3mjs Chain B (length=475) Species:
40318
(Streptomyces nodosus) [
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SHMDALRYHIEWNRVAEPGTARPAGRLLAVISPDHAGAPWVTAVLDALGP
DTVRFEAKGTDRAAWAAQLAQLREDEGEFHAVVSLLAAAEALHTDHGSVP
LGLAQTLLLAQALGDAGLTAPLWCLTRGGVAAGRGDVLSSPVQGALWGLG
RVIGLEHPDRWGGLIDLPETVDTRAAARLTGLLADAGGEDQLAIRGSGVL
ARRLAHAAPAVPGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLV
LTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA
PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD
AFVLFSSGAAVWGSGGQPGYAAANAYLDALAEHRRSLGLTASSVAWGTWG
EVGMATDPEVHDRLVRQGVLAMEPEHALGALDQMLENDDTAAAITLMDWE
MFAPAFTANRPSALLSTVPEAVSAL
Ligand information
Ligand ID
NDP
InChI
InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
ACFIXJIJDZMPPO-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N
Formula
C21 H30 N7 O17 P3
Name
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
ChEMBL
CHEMBL407009
DrugBank
DB02338
ZINC
ZINC000008215411
PDB chain
3mjs Chain B Residue 476 [
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Receptor-Ligand Complex Structure
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PDB
3mjs
Structural and Functional Analysis of A-Type Ketoreductases from the Amphotericin Modular Polyketide Synthase.
Resolution
1.4 Å
Binding residue
(original residue number in PDB)
G225 G228 G229 I230 S250 R251 R252 D279 A280 S305 A306 G307 K330 Y367 W393 T395 G400 M401
Binding residue
(residue number reindexed from 1)
G228 G231 G232 I233 S253 R254 R255 D282 A283 S308 A309 G310 K333 Y370 W396 T398 G403 M404
Annotation score
4
Enzymatic activity
Enzyme Commision number
1.1.1.100
: 3-oxoacyl-[acyl-carrier-protein] reductase.
External links
PDB
RCSB:3mjs
,
PDBe:3mjs
,
PDBj:3mjs
PDBsum
3mjs
PubMed
20696392
UniProt
Q93NW7
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