Structure of PDB 3lgb Chain B Binding Site BS01

Receptor Information
>3lgb Chain B (length=193) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DEINAQSVWSEEISSNYPLCIKNLMEGLKKNHHLRYYGRQQLSLFLKGIG
LSADEALKFWSEAFTNMTMEKFNKEYRYSFRHNYGLEGNRINYKPWDCHT
ILSKPRPGRGDYHGCPFRDWSHERLSAELRSMKLTQAQIISVLDSCQKGE
YTIACTKVFEMTHNSASADLEIGEQTHIAHPNLYFERSRQLQK
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain3lgb Chain B Residue 514 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3lgb Shared Active Site Architecture between the Large Subunit of Eukaryotic Primase and DNA Photolyase
Resolution1.54 Å
Binding residue
(original residue number in PDB)		P334 C336 C417 I420 C434 F436 T471 C474 P500
Binding residue
(residue number reindexed from 1)		P18 C20 C98 I101 C115 F117 T152 C155 P181
Annotation score4
Enzymatic activity
Enzyme Commision number 2.7.7.-
Gene Ontology
Biological Process
GO:0006269 DNA replication, synthesis of primer

View graph for
Biological Process
External links
PDB RCSB:3lgb, PDBe:3lgb, PDBj:3lgb
PDBsum3lgb
PubMed20404922
UniProtP20457|PRI2_YEAST DNA primase large subunit (Gene Name=PRI2)

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