Structure of PDB 3jd5 Chain B Binding Site BS01

Receptor Information
>3jd5 Chain B (length=217) Species: 9913 (Bos taurus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RSARILSEPLKHSDFFNVKELFSVRSLFNARVHLGHKAGCRHRFMEPYIF
GSRLGQDIIDLEQTATHLQLALNFTAHVAFRGGIILFVSRARQFSHLIES
TARSCGEYAHTRYFKGGLLTNAPLLLGARVRLPDLIIFLHTLNNVFEPHV
AVRDAAKMSIPTVGVVDTNCNPCLITYPVPGNDDSPPAVQLFCQLFQTAV
TRAKEKRRQLEALYRLQ
Ligand information
>3jd5 Chain A (length=952) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agguuuggucccagccuuccuguuaacucuuaauaaacuuacacaugcaa
gcaucuacaccccagugagaaugcccucuagguuauuaaaacuaagagga
gcuggcaucaagcacacacccuguagcucacgacgccuugcuuaaccaca
ccccacgggaaacagcagugacaaaaauuaagccauaaacgaaaguuuga
cuaaguuauauuaauuaggguugguaaaucucgugccagccaccgcgguc
auacgauuaacccaagcuaacaggaguacggcguaaaacguguuaaagca
ccauaccaaauaggguuaaauucuaacuaagcuguaaaaagccaugauua
aaauaaaaauaaaugacgaaagugacccuacaauagccgacgcacuauag
cuaagacccaaacugggauuagauaccccacuaugcuuagcccuaaacac
agauaauuacauaaacaaaauuauucgccagaguacuacuagcaacagcu
uaaaacucaaaggacuuggcggugcuuuauauccuucuagaggagccugu
ucuauaaucgauaaaccccgauaaaccucaccaauucuugcuaauacagu
cuauauaccgccaucuucagcaaacccuaaaaaggaaaaaaaguaagcgu
aauuaugauacauaaaaacguuaggucaagguguaaccuaugaaauggga
agaaaugggcuacauucucuacaccaagagaaucaagcacgaaaguuauu
augaaaccaauaaccaaaggaggauuuagcaguaaacuaagaauagagug
cuuaguugaauuaggccaugaagcacgcacacaccgcccgucacccuccu
caaauagauucagugcaucuaacccuauuuaaacgcacuagcuacaugag
aggagacaagucguaacaagguaagcauacuggaaagugugcuuggauaa
au
<<<.<..{..[[.>.>>><<<<<<<.<..<<<<<<<.....<<<.<<<..
..............<<......<<<<<<..<<<.......>>>..>>>>.
>>.<<<....<<<..<<.....>>.>>>......>>>..........>>.
..............>>>>>>..........<<.....<<......>>...
>>....>.>>>>>>....<<<<<<<.....(((.....((.>>>))....
...)))..>>>.>..>.>>>>>>>.....<<<((.....<<<.<...<..
..........<<<<<<........<<.<..<<<......>>>...>.>>.
................<....>..>>>>>>......>....>>>>..<<<
<<<<<....<...<<<<.........>>>>...>.>>>>>>..>>.....
.<<<<<<.......))...>>>>>>.>>>.<<<.......<<<....>>>
.....>>>...]]..}<<<<<.<<<<<<<....<..<<<<<...<<<<<<
<<<.....<<........>>..........<<<.<<<...........<<
.<<<..<<<<<<.......<<..<<<<<....>>>.......>>..>>..
...<<.......>.>........>>>...>>>>>>>>....>>>.>>>..
>>.>>>>>>>......<<<<......>>>>..............<<<<<<
........>>>>>>..........>>>>>.....<<<<<<<.........
>>>>>>>......>....>>>>>>>>>>.>>....<..<<.<...<<<<<
<....<.....<<<<<....<........>....>>>>>...>......>
>>>>>....>.>>...>......<<<<<<<<....>>>>>>>>.......
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3jd5 Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome.
Resolution7.0 Å
Binding residue
(original residue number in PDB)		R89 R136 R138 Y159 K161 G163 T166 L171 V196 R199 K203
Binding residue
(residue number reindexed from 1)		R43 R90 R92 Y113 K115 G117 T120 L125 V150 R153 K157
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
GO:0032543 mitochondrial translation
GO:0061668 mitochondrial ribosome assembly
Cellular Component
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005763 mitochondrial small ribosomal subunit
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3jd5, PDBe:3jd5, PDBj:3jd5
PDBsum3jd5
PubMed24799711
UniProtP82923|RT02_BOVIN Small ribosomal subunit protein uS2m (Gene Name=MRPS2)

[Back to BioLiP]