Structure of PDB 3hkj Chain B Binding Site BS01
Receptor Information
>3hkj Chain B (length=252) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPW
DKNFTENDLLVRIGKHSRTRYERNIEKISMLEKIYIHPRYNWRENLDRDI
ALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTG
QPSVLQVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDS
GGPFVMKSPFNNRWYQMGIVSAGAGCDRKYGFYTHVFRLKKWIQKVIDQF
GE
Ligand information
>3hkj Chain C (length=9) Species:
9606
(Homo sapiens) [
Search peptide sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
NDKYEPFWE
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
3hkj
Mechanism of the Anticoagulant Activity of Thrombin Mutant W215A/E217A.
Resolution
2.6 Å
Binding residue
(original residue number in PDB)
F34 L40 L65 R67 R73 T74 R75 Y76 I82 M84
Binding residue
(residue number reindexed from 1)
F19 L26 L60 R62 R68 T69 R70 Y71 I78 M80
Enzymatic activity
Catalytic site (original residue number in PDB)
H57 D102 E192 G193 D194 S195 G196
Catalytic site (residue number reindexed from 1)
H43 D99 E197 G198 D199 S200 G201
Enzyme Commision number
3.4.21.5
: thrombin.
Gene Ontology
Molecular Function
GO:0004252
serine-type endopeptidase activity
GO:0005509
calcium ion binding
Biological Process
GO:0006508
proteolysis
GO:0007596
blood coagulation
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:3hkj
,
PDBe:3hkj
,
PDBj:3hkj
PDBsum
3hkj
PubMed
19586901
UniProt
P00734
|THRB_HUMAN Prothrombin (Gene Name=F2)
[
Back to BioLiP
]