Structure of PDB 3h02 Chain B Binding Site BS01

Receptor Information
>3h02 Chain B (length=262) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TMLYAPVEWHDCSEGYTDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEM
IQALADARYDDNVGVIILTGEGDKAFCAGGHHLNVLDFQRQIRTCPKPVV
AMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVGSFDGGWGASYMAR
IVGQKKAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKETVRWCREMLQ
NSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQK
RQPDFSKFKRNP
Ligand information
Ligand IDBCT
InChIInChI=1S/CH2O3/c2-1(3)4/h(H2,2,3,4)/p-1
InChIKeyBVKZGUZCCUSVTD-UHFFFAOYSA-M
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(=O)(O)[O-]
CACTVS 3.341OC([O-])=O
ACDLabs 10.04[O-]C(=O)O
FormulaC H O3
NameBICARBONATE ION
ChEMBL
DrugBank
ZINC
PDB chain3h02 Chain B Residue 286 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3h02 2.15 Angstrom Resolution Crystal Structure of Naphthoate Synthase from Salmonella typhimurium.
Resolution2.15 Å
Binding residue
(original residue number in PDB)		G132 Q154 G156 W184
Binding residue
(residue number reindexed from 1)		G109 Q131 G133 W161
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G86 H105 L109 G133 V136 G156 S161 D163 G164 A250 Y258
Catalytic site (residue number reindexed from 1) G80 H82 L86 G110 V113 G133 S138 D140 G141 A227 Y235
Enzyme Commision number 4.1.3.36: 1,4-dihydroxy-2-naphthoyl-CoA synthase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008935 1,4-dihydroxy-2-naphthoyl-CoA synthase activity
GO:0016829 lyase activity
Biological Process
GO:0009234 menaquinone biosynthetic process
Cellular Component
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3h02, PDBe:3h02, PDBj:3h02
PDBsum3h02
PubMed
UniProtQ7CQ56|MENB_SALTY 1,4-dihydroxy-2-naphthoyl-CoA synthase (Gene Name=menB)

[Back to BioLiP]