Structure of PDB 3gc9 Chain B Binding Site BS01

Receptor Information
>3gc9 Chain B (length=339) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGPRAGFYRQELNKTVWEVPQRLQGLRPVGSGAYGSVCSAYDARLRQKVA
VKKLSRPFQSLIHARRTYRELRLLKHLKHENVIGLLDVFTPATSIEDFSE
VYLVTTLMGADLNNIVKSQALSDEHVQFLVYQLLRGLKYIHSAGIIHRDL
KPSNVAVNEDSELRILDFGLARVATRWYRAPEIMLNWMHYNQTVDIWSVG
CIMAELLQGKALFPGSDYIDQLKRIMEVVGTPSPEVLAKISSEHARTYIQ
SLPPMPQKDLSSIFRGANPLAIDLLGRMLVLDSDQRVSAAEALAHAYFSQ
YHDPEDEPEAEPYDESVEAKERTLEEWKELTYQEVLSFK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain3gc9 Chain B Residue 603 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3gc9 The three-dimensional structure of MAP kinase p38beta: different features of the ATP-binding site in p38beta compared with p38alpha.
Resolution2.05 Å
Binding residue
(original residue number in PDB)		E245 D292 D294
Binding residue
(residue number reindexed from 1)		E235 D282 D284
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D150 K152 S154 N155 D168 T185
Catalytic site (residue number reindexed from 1) D149 K151 S153 N154 D167 T175
Enzyme Commision number 2.7.11.24: mitogen-activated protein kinase.
Gene Ontology
Molecular Function
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004707 MAP kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0106310 protein serine kinase activity
Biological Process
GO:0000165 MAPK cascade
GO:0001649 osteoblast differentiation
GO:0006468 protein phosphorylation
GO:0010628 positive regulation of gene expression
GO:0016310 phosphorylation
GO:0031098 stress-activated protein kinase signaling cascade
GO:0032735 positive regulation of interleukin-12 production
GO:0033554 cellular response to stress
GO:0035556 intracellular signal transduction
GO:0038066 p38MAPK cascade
GO:0045648 positive regulation of erythrocyte differentiation
GO:0051149 positive regulation of muscle cell differentiation
GO:0051403 stress-activated MAPK cascade
GO:0060038 cardiac muscle cell proliferation
GO:0060043 regulation of cardiac muscle cell proliferation
GO:0060044 negative regulation of cardiac muscle cell proliferation
GO:0060348 bone development
GO:0071347 cellular response to interleukin-1
GO:0071493 cellular response to UV-B
GO:0090398 cellular senescence
GO:0098586 cellular response to virus
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3gc9, PDBe:3gc9, PDBj:3gc9
PDBsum3gc9
PubMed19622861
UniProtQ15759|MK11_HUMAN Mitogen-activated protein kinase 11 (Gene Name=MAPK11)

[Back to BioLiP]