Structure of PDB 3dwl Chain B Binding Site BS01

Receptor Information
>3dwl Chain B (length=355) Species: 4896 (Schizosaccharomyces pombe) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRTEDLDFFIGNDALK
KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP
LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT
VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRLKTAERI
KEECCYVCPDIVKEFSRFDRLKYASIDVGFERFLAPEIFFNPEIASSDFL
TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIV
DERGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIA
RRYQI
Ligand information
Ligand IDATP
InChIInChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyZKHQWZAMYRWXGA-KQYNXXCUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.5.0c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
FormulaC10 H16 N5 O13 P3
NameADENOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL14249
DrugBankDB00171
ZINCZINC000004261765
PDB chain3dwl Chain B Residue 428 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3dwl Structure and biochemical properties of fission yeast arp2/3 complex lacking the arp2 subunit.
Resolution3.78 Å
Binding residue
(original residue number in PDB)		Y16 G187 G213 K241 E242 G335 F339
Binding residue
(residue number reindexed from 1)		Y14 G155 G181 K201 E202 G281 F285
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003779 actin binding
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0051015 actin filament binding
Biological Process
GO:0006897 endocytosis
GO:0030036 actin cytoskeleton organization
GO:0030041 actin filament polymerization
GO:0034314 Arp2/3 complex-mediated actin nucleation
GO:0044396 actin cortical patch organization
GO:0090135 actin filament branching
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005856 cytoskeleton
GO:0005885 Arp2/3 protein complex
GO:0030479 actin cortical patch
GO:0032153 cell division site
GO:0051285 cell cortex of cell tip

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3dwl, PDBe:3dwl, PDBj:3dwl
PDBsum3dwl
PubMed18640983
UniProtP32390|ARP3_SCHPO Actin-related protein 3 (Gene Name=act2)

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