Structure of PDB 3bwv Chain B Binding Site BS01

Receptor Information

>3bwv Chain B (length=168) Species: 176280 (Staphylococcus epidermidis ATCC 12228) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLGLVMDILKE
PGFFRNLDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEYF
PFLDPQHFVFCGRKNIILADYLIDDNPKQLEIFEGKSIMFTASHNVYEHR
FERVSGWRDVKNYFNSIE

Ligand information

Ligand ID

InChI

InChI=1S/Mg/q+2

InChIKey

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Name

MAGNESIUM ION

PDB chain

3bwv Chain B Residue 300 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	3bwv Crystal structure of deoxyribonucleotidase-like protein (NP_764060.1) from Staphylococcus epidermidis ATCC 12228 at 1.55 A resolution
Resolution	1.55 Å
Binding residue (original residue number in PDB)	D9 D11 D135
Binding residue (residue number reindexed from 1)	D7 D9 D125
Annotation score	1

Enzymatic activity

Catalytic site (original residue number in PDB)	D9 D11
Catalytic site (residue number reindexed from 1)	D7 D9
Enzyme Commision number	3.1.3.-

Gene Ontology

	Molecular Function
GO:0008253	5'-nucleotidase activity
GO:0016787	hydrolase activity
GO:0046872	metal ion binding

	Biological Process
GO:0009223	pyrimidine deoxyribonucleotide catabolic process
GO:0009264	deoxyribonucleotide catabolic process

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:3bwv, PDBe:3bwv, PDBj:3bwv
PDBsum	3bwv
PubMed
UniProt	Q8CTG7\|53DR_STAES Putative 5'(3')-deoxyribonucleotidase (Gene Name=SE_0505)

[Back to BioLiP]