Structure of PDB 3b39 Chain B Binding Site BS01

Receptor Information
>3b39 Chain B (length=310) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NAHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAI
GFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPI
RDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEP
NRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCY
DGDRAGRDAAWCALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAF
EARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLR
IYLRQELGNK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3b39 Identification of a DNA primase template tracking site redefines the geometry of primer synthesis.
Resolution2.35 Å
Binding residue
(original residue number in PDB)
W165 Y197
Binding residue
(residue number reindexed from 1)
W57 Y89
Enzymatic activity
Enzyme Commision number 2.7.7.101: DNA primase DnaG.
Gene Ontology
Molecular Function
GO:0003896 DNA primase activity
GO:0016779 nucleotidyltransferase activity
Biological Process
GO:0006269 DNA replication, synthesis of primer

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:3b39, PDBe:3b39, PDBj:3b39
PDBsum3b39
PubMed18193061
UniProtP0ABS5|DNAG_ECOLI DNA primase (Gene Name=dnaG)

[Back to BioLiP]