Structure of PDB 2yip Chain B Binding Site BS01

Receptor Information
>2yip Chain B (length=131) Species: 5813 (Sarcocystis muris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QLDVSCFAHDKNIGSRTEQLSVVHVASAQDCMKECQALPTCSHFTYNKNS
KKCHLKAGAPEFYTYTGDMTGPRSCEHNCSDACWMDGNNPLAVWDYSGQP
PALCWAACMGTPGCDLYTFQGMTCKLYSQTS
Ligand information
Ligand IDYIO
InChIInChI=1S/C6H12O5S/c7-1-2-3(8)4(9)5(10)6(12)11-2/h2-10,12H,1H2/t2-,3+,4+,5-,6+/m1/s1
InChIKeyJUSMHIGDXPKSID-PHYPRBDBSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.6.1C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)S)O)O)O)O
OpenEye OEToolkits 1.6.1C(C1C(C(C(C(O1)S)O)O)O)O
CACTVS 3.352OC[C@H]1O[C@@H](S)[C@H](O)[C@@H](O)[C@H]1O
CACTVS 3.352OC[CH]1O[CH](S)[CH](O)[CH](O)[CH]1O
FormulaC6 H12 O5 S
Name1-thio-beta-D-galactopyranose;
(2R,3R,4S,5R,6S)-2-(HYDROXYMETHYL)-6-SULFANYL-OXANE-3,4,5-TRIOL;
1-thio-beta-D-galactose;
1-thio-D-galactose;
1-thio-galactose
ChEMBL
DrugBank
ZINCZINC000003873643
PDB chain2yip Chain B Residue 1135 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2yip Pan-Modular Structure of Microneme Protein Sml-2 from Parasite Sarcocystis Muris at 1.95 A Resolution and its Complex with 1-Thio-Beta-D-Galactose.
Resolution2.14 Å
Binding residue
(original residue number in PDB)
T48 H57 K59 Y66 Y68 D71
Binding residue
(residue number reindexed from 1)
T45 H54 K56 Y63 Y65 D68
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0030246 carbohydrate binding
Biological Process
GO:0006508 proteolysis
GO:0007155 cell adhesion
Cellular Component
GO:0005576 extracellular region
GO:0020009 microneme
GO:0031410 cytoplasmic vesicle

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2yip, PDBe:2yip, PDBj:2yip
PDBsum2yip
PubMed22101820
UniProtP81860|MIA2_SARMU Microneme antigen L2

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