Structure of PDB 2xnj Chain B Binding Site BS01
Receptor Information
>2xnj Chain B (length=250) Species:
562
(Escherichia coli) [
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ADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEIDGERVQRA
YSYVNSPDNPDLEFYLVTVVYTNDAGEVVKGKLSPRLAALKPGDEVQVVS
EAAGFFVLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDRFKNLVLVHA
ARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETAAGSLTGRIPALIESG
ELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHGHMTAEHY
Ligand information
Ligand ID
FAD
InChI
InChI=1S/C27H33N9O15P2/c1-10-3-12-13(4-11(10)2)35(24-18(32-12)25(42)34-27(43)33-24)5-14(37)19(39)15(38)6-48-52(44,45)51-53(46,47)49-7-16-20(40)21(41)26(50-16)36-9-31-17-22(28)29-8-30-23(17)36/h3-4,8-9,14-16,19-21,26,37-41H,5-7H2,1-2H3,(H,44,45)(H,46,47)(H2,28,29,30)(H,34,42,43)/t14-,15+,16+,19-,20+,21+,26+/m0/s1
InChIKey
VWWQXMAJTJZDQX-UYBVJOGSSA-N
SMILES
Software
SMILES
CACTVS 3.341
Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)c2cc1C
OpenEye OEToolkits 1.5.0
Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O
OpenEye OEToolkits 1.5.0
Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO[P@@](=O)(O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O
CACTVS 3.341
Cc1cc2N=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)c2cc1C
ACDLabs 10.04
O=C2C3=Nc1cc(c(cc1N(C3=NC(=O)N2)CC(O)C(O)C(O)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c(ncnc45)N)C(O)C6O)C)C
Formula
C27 H33 N9 O15 P2
Name
FLAVIN-ADENINE DINUCLEOTIDE
ChEMBL
CHEMBL1232653
DrugBank
DB03147
ZINC
ZINC000008215434
PDB chain
2xnj Chain B Residue 1257 [
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Receptor-Ligand Complex Structure
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PDB
2xnj
Swapping Fad Binding Motifs between Plastidic and Bacterial Ferredoxin-Nadp(H) Reductases.
Resolution
1.9 Å
Binding residue
(original residue number in PDB)
F36 R50 A51 Y52 S53 Y66 V70 Y72 G82 K83 L84 S85 T125 Y256
Binding residue
(residue number reindexed from 1)
F35 R49 A50 Y51 S52 Y65 V69 Y71 G81 K82 L83 S84 T124 Y250
Annotation score
2
Binding affinity
MOAD
: Kd=1.1nM
Enzymatic activity
Catalytic site (original residue number in PDB)
F36 Y52 S53 C221 E254 Y256
Catalytic site (residue number reindexed from 1)
F35 Y51 S52 C220 E248 Y250
Enzyme Commision number
1.18.1.2
: ferredoxin--NADP(+) reductase.
1.19.1.1
: flavodoxin--NADP(+) reductase.
Gene Ontology
Molecular Function
GO:0004324
ferredoxin-NADP+ reductase activity
GO:0016491
oxidoreductase activity
View graph for
Molecular Function
External links
PDB
RCSB:2xnj
,
PDBe:2xnj
,
PDBj:2xnj
PDBsum
2xnj
PubMed
21306142
UniProt
P28861
|FENR_ECOLI Flavodoxin/ferredoxin--NADP reductase (Gene Name=fpr)
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