Structure of PDB 2x0h Chain B Binding Site BS01

Receptor Information
>2x0h Chain B (length=642) Species: 226186 (Bacteroides thetaiotaomicron VPI-5482) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLQPPPQQLIVQNKTIDLPAVYQLNGGEEANPHAVKVLKELLSGKQSSKK
GMLISIGEKGDKSVRKYSRQIPDHKEGYYLSVNEKEIVLAGNDERGTYYA
LQTFAQLLKDGKLPEVEIKDYPSVRYRGVVEGFYGTPWSHQARLSQLKFY
GKNKMNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFV
WAIHPGQDIKWNKEDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK
QAELLNYIDEKFAQVKPDINQLVMCPTEYNKSWSNPNGNYLTTLGDKLNP
SIQIMWTGDRVISDITRDGISWINERIKRPAYIWWNFPVSDYVRDHLLLG
PVYGNDTTIAKEMSGFVTNPMEHAESSKIAIYSVASYAWNPAKYDTWQTW
KDAIRTILPSAAEELECFAMHNSDLGPNGHGYRREESMDIQPAAERFLKA
FKEGKNYDKADFETLQYTFERMKESADILLMNTENKPLIVEITPWVHQFK
LTAEMGEEVLKMVERNESYFLRKYNHVKALQQQMFYIDQTSNQNPYQPGV
KTATRVIKPLIDRTFATVVKFFNQKFNAHLDATTDYMPHKMNLPLQVKAN
RVLIEIELDAIYPGENIQINSAGLQKAPVKFVRFQFVLTIEK
Ligand information
Ligand ID14T
InChIInChI=1S/C14H15F4NO6/c15-6-2-1-5(3-7(6)16)24-14-9(19-13(23)12(17)18)11(22)10(21)8(4-20)25-14/h1-3,8-12,14,20-22H,4H2,(H,19,23)/t8-,9-,10-,11-,14-/m1/s1
InChIKeyYFQSDCPFGCAUBD-GOBQNSBTSA-N
SMILES
SoftwareSMILES
CACTVS 3.352OC[C@H]1O[C@@H](Oc2ccc(F)c(F)c2)[C@H](NC(=O)C(F)F)[C@@H](O)[C@@H]1O
CACTVS 3.352OC[CH]1O[CH](Oc2ccc(F)c(F)c2)[CH](NC(=O)C(F)F)[CH](O)[CH]1O
OpenEye OEToolkits 1.6.1c1cc(c(cc1OC2C(C(C(C(O2)CO)O)O)NC(=O)C(F)F)F)F
OpenEye OEToolkits 1.6.1c1cc(c(cc1O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)NC(=O)C(F)F)F)F
ACDLabs 10.04FC(F)C(=O)NC2C(O)C(O)C(OC2Oc1cc(F)c(F)cc1)CO
FormulaC14 H15 F4 N O6
Name3,4-difluorophenyl 2-deoxy-2-[(difluoroacetyl)amino]-beta-D-glucopyranoside;
3,4-difluorophenyl 2-deoxy-2-[(difluoroacetyl)amino]-beta-D-glucoside;
3,4-difluorophenyl 2-deoxy-2-[(difluoroacetyl)amino]-D-glucoside;
3,4-difluorophenyl 2-deoxy-2-[(difluoroacetyl)amino]-glucoside
ChEMBL
DrugBank
ZINCZINC000058632992
PDB chain2x0h Chain B Residue 1000 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2x0h Visualizing the Reaction Coordinate of an O-Glcnac Hydrolase
Resolution2.21 Å
Binding residue
(original residue number in PDB)
G135 Y137 K166 D242 D243 C278 Y282 W286 V314 W337 N339 D344
Binding residue
(residue number reindexed from 1)
G132 Y134 K163 D239 D240 C275 Y279 W283 V311 W334 N336 D341
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.169: protein O-GlcNAcase.
External links
PDB RCSB:2x0h, PDBe:2x0h, PDBj:2x0h
PDBsum2x0h
PubMed20067256
UniProtQ89ZI2|OGA_BACTN O-GlcNAcase BT_4395 (Gene Name=BT_4395)

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