Structure of PDB 2waq Chain B Binding Site BS01

Receptor Information
>2waq Chain B (length=1090) Species: 2286 (Saccharolobus shibatae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIP
GLKVRLGKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVE
NNIEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIV
NGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTARVPVTIERLK
DGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSLDPEIQNELFPSL
EQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAD
DRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRV
AFKAFVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGG
RTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPF
ETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTK
WSKVILNGRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINEV
HVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQGKIEYL
DAEEEENAYVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEHNQSPRN
TYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNR
PAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYP
GGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSP
PAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFA
SRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIA
GKYAALSGNIVDATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKI
KSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFG
EMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVC
PIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILEDRV
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain2waq Chain B Residue 1400 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2waq Evolution of complex RNA polymerases: the complete archaeal RNA polymerase structure.
Resolution3.35 Å
Binding residue
(original residue number in PDB)		R174 H570
Binding residue
(residue number reindexed from 1)		R167 H551
Annotation score1
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:2waq, PDBe:2waq, PDBj:2waq
PDBsum2waq
PubMed19419240
UniProtB8YB55|RPO2_SACSH DNA-directed RNA polymerase subunit Rpo2 (Gene Name=rpo2)

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