Structure of PDB 2vme Chain B Binding Site BS01

Receptor Information
>2vme Chain B (length=256) Species: 366501 (Dictyostelium discoideum AX2) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVPAGSVSCLANALLNLRSSTDYNADHGVKNSILNFSNSKDASRFDGSES
WSSSVLDKNQFIVAGSDSVKHFVAISTQGRGDHDQWVTSYKLRYTLDNVN
WVEYNNGEIINANKDRNSIVTINFNPPIKARSIAIHPQTYNNHISLRWEL
YALPVKSYSNPSVQVGEVSIGDRSLNSGTGSRTIVRHVKFPVEFLSVPIV
SIGCKKVDAHTDNGQMRWEGKSENITTKGFDLTFITWGNNAVYDLTFDYV
AVEFNN
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain2vme Chain B Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2vme Structure Determination of Discoidin II from Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain.
Resolution2.45 Å
Binding residue
(original residue number in PDB)		N39 S40 D47
Binding residue
(residue number reindexed from 1)		N38 S39 D46
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016936 galactoside binding
GO:0030246 carbohydrate binding
GO:0030247 polysaccharide binding
GO:0046871 N-acetylgalactosamine binding
GO:0046872 metal ion binding
GO:0070492 oligosaccharide binding
Biological Process
GO:0007010 cytoskeleton organization
GO:0007155 cell adhesion
GO:0009617 response to bacterium
GO:0098609 cell-cell adhesion
GO:0140582 adenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0009986 cell surface
GO:0031012 extracellular matrix
GO:0031160 spore wall
GO:0031982 vesicle
GO:0045335 phagocytic vesicle
GO:0098636 protein complex involved in cell adhesion

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:2vme, PDBe:2vme, PDBj:2vme
PDBsum2vme
PubMed18384150
UniProtP42530|DIS2_DICDI Discoidin-2 (Gene Name=dscE)

[Back to BioLiP]