Structure of PDB 2r5y Chain B Binding Site BS01

Receptor Information

>2r5y Chain B (length=59) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGN
KRIRYKKNI

Ligand information

>2r5y Chain C (length=20) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

actctatgatttatgggctg

Receptor-Ligand Complex Structure

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PDB	2r5y Functional specificity of a Hox protein mediated by the recognition of minor groove structure
Resolution	2.6 Å
Binding residue (original residue number in PDB)	R205 F208 Q244 N247 N251 R255
Binding residue (residue number reindexed from 1)	R1 F4 Q43 N46 N50 R54
Binding affinity	PDBbind-CN: Kd=10.3nM

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677	DNA binding

	Biological Process
GO:0006355	regulation of DNA-templated transcription

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Molecular Function

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Biological Process

External links

PDB	RCSB:2r5y, PDBe:2r5y, PDBj:2r5y
PDBsum	2r5y
PubMed	17981120
UniProt	P40427\|EXD_DROME Homeobox protein extradenticle (Gene Name=exd)

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