Structure of PDB 2owq Chain B Binding Site BS01

Receptor Information
>2owq Chain B (length=224) Species: 696871 (Vaccinia virus Western Reserve) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGLVPRGSHMNSVTVSHAPYTITYHNDWEPVMSQLVEFYNEVASWLLRDE
TSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFESPNFTKKSIKE
IASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKIS
KLLLQHITKHVSVLYCLGKTDFSNIRAKLESVTTIVGYHPAARDFEKDRS
FEIINVLLELDNKAPINWAQGFIY
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain2owq Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2owq Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Resolution2.4 Å
Binding residue
(original residue number in PDB)		G66 D68 Y70 P78 F79 N120
Binding residue
(residue number reindexed from 1)		G75 D77 Y79 P87 F88 N129
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.2.27: uracil-DNA glycosylase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004844 uracil DNA N-glycosylase activity
GO:0016787 hydrolase activity
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
Biological Process
GO:0006281 DNA repair

View graph for
Molecular Function
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Biological Process
External links
PDB RCSB:2owq, PDBe:2owq, PDBj:2owq
PDBsum2owq
PubMed17605817
UniProtP04303|UNG_VACCW Uracil-DNA glycosylase (Gene Name=OPG116)

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