Structure of PDB 2ipf Chain B Binding Site BS01
Receptor Information
>2ipf Chain B (length=318) Species:
10090
(Mus musculus) [
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HCVILNDGNFIPVLGFGTALPLECPKSKAKELTKIAIDAGFHHFDSASVY
NTEDHVGEAIRSKIADGTVRREDIFYTSKVWCTSLHPELVRASLERSLQK
LQFDYVDLYLIHYPMALKPGEENFPVDEHGKLIFDRVDLCATWEAMEKCK
DAGLTKSIGVSNFNYRQLEMILNKPGLKYKPVCNQVECHPYLNQMKLLDF
CKSKDIVLVAYGVLGTQRYGGWVDQNSPVLLDEPVLGSMAKKYNRTPALI
ALRYQLQRGIVVLNTSLKEERIKENMQVFEFQLSSEDMKVLDGLNRNMRY
IPAAIFKGHPNWPFLDEY
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
2ipf Chain B Residue 2 [
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Receptor-Ligand Complex Structure
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PDB
2ipf
Mouse 17alpha-Hydroxysteroid Dehydrogenase (AKR1C21) Binds Steroids Differently from other Aldo-keto Reductases: Identification and Characterization of Amino Acid Residues Critical for Substrate Binding.
Resolution
1.85 Å
Binding residue
(original residue number in PDB)
G22 A24 D50 Y55 H117 Q190 Y216 G217 L219 T221 Q222 Y224 L236 A253 T270 S271 L272 K273 R276 E279 N280
Binding residue
(residue number reindexed from 1)
G17 A19 D45 Y50 H112 Q185 Y211 G212 L214 T216 Q217 Y219 L231 A248 T265 S266 L267 K268 R271 E274 N275
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
D50 Y55 K84 H117
Catalytic site (residue number reindexed from 1)
D45 Y50 K79 H112
Enzyme Commision number
1.1.1.-
1.1.1.209
: 3(or 17)alpha-hydroxysteroid dehydrogenase.
Gene Ontology
Molecular Function
GO:0004033
aldo-keto reductase (NADPH) activity
GO:0005496
steroid binding
GO:0016491
oxidoreductase activity
GO:0033764
steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0047023
androsterone dehydrogenase activity
GO:0047024
5alpha-androstane-3beta,17beta-diol dehydrogenase activity
GO:0070401
NADP+ binding
GO:0070402
NADPH binding
GO:0072555
17-beta-ketosteroid reductase (NADPH) activity
GO:0072582
17-beta-hydroxysteroid dehydrogenase (NADP+) activity
GO:1902121
lithocholic acid binding
Biological Process
GO:0006694
steroid biosynthetic process
GO:0008202
steroid metabolic process
Cellular Component
GO:0005737
cytoplasm
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:2ipf
,
PDBe:2ipf
,
PDBj:2ipf
PDBsum
2ipf
PubMed
17442338
UniProt
Q91WR5
|AK1CL_MOUSE Aldo-keto reductase family 1 member C21 (Gene Name=Akr1c21)
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