Structure of PDB 2i5r Chain B Binding Site BS01

Receptor Information
>2i5r Chain B (length=118) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RRVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGY
DVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVL
LRARFDVRIESLMRGRGE
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain2i5r Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2i5r Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus.
Resolution1.65 Å
Binding residue
(original residue number in PDB)
D58 D60
Binding residue
(residue number reindexed from 1)
D57 D59
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0043822 ribonuclease M5 activity
GO:0046872 metal ion binding
Biological Process
GO:0006364 rRNA processing

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:2i5r, PDBe:2i5r, PDBj:2i5r
PDBsum2i5r
PubMed17705269
UniProtQ5KVJ9

[Back to BioLiP]