Structure of PDB 2gdf Chain B Binding Site BS01

Receptor Information
>2gdf Chain B (length=237) Species: 192415 (Macropsychanthus violaceus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ADTIVAVELDSYPNTDIGDPNYPHIGIDIKSIRSKSTARWNMQTGKVGTV
HISYNSVAKRLSAVVSYSGSSSTTVSYDVDLNNVLPEWVRVGLSATTGLY
KETNTILSWSFTSKLKTNSAADENSLHFSFHKFSQNPKDLILQGDAFTDS
DGNLELTKVSSSGDPQGNSVGRALFYAPVHIWEKSAVVASFDATFTFLIK
SPDREPADGITFFIANTDTSIPSGSGGRLLGLFPDAN
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain2gdf Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2gdf Crystal structure of Dioclea violacea seed lectin
Resolution2.4 Å
Binding residue
(original residue number in PDB)
E8 D10 D19 H24
Binding residue
(residue number reindexed from 1)
E8 D10 D19 H24
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005537 D-mannose binding
GO:0030246 carbohydrate binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0090729 toxin activity
Biological Process
GO:0008150 biological_process
GO:0035821 modulation of process of another organism
Cellular Component
GO:0005575 cellular_component

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2gdf, PDBe:2gdf, PDBj:2gdf
PDBsum2gdf
PubMed
UniProtP08902|LECA_DIOGR Lectin alpha chain

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