Structure of PDB 2g2r Chain B Binding Site BS01

Receptor Information
>2g2r Chain B (length=219) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVQLQQSGPVLVKPGTSLKMSCKASGYTFTAYYMNWMKQSHGKRLEWIAV
INPYNGFTTYNQKFKGKATLTVDKSSNTAYMDLNSLTSEDSAVYYCVPYD
YAADRVYWGHGTLVTVSTAKTTAPSVYPLAPVCGGTTGSSVTLGCLVKGY
FPEPVTLTWNSGSLSSGVHTFPALLQSGLYTLSSSVTVTSNTWPSQTITC
NVAHPASSTKVDKKIEPRG
Ligand information
Ligand IDTNS
InChIInChI=1S/C20H22N2O4/c1-21(15-3-2-4-20(23)24)18-11-7-16(8-12-18)5-6-17-9-13-19(14-10-17)22(25)26/h5-14H,2-4,15H2,1H3,(H,23,24)/b6-5+
InChIKeyQLLZAVDYYAQESE-AATRIKPKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CN(CCCCC(=O)O)c1ccc(cc1)C=Cc2ccc(cc2)[N+](=O)[O-]
CACTVS 3.341CN(CCCCC(O)=O)c1ccc(\C=C\c2ccc(cc2)[N+]([O-])=O)cc1
OpenEye OEToolkits 1.5.0CN(CCCCC(=O)O)c1ccc(cc1)\C=C\c2ccc(cc2)[N+](=O)[O-]
CACTVS 3.341CN(CCCCC(O)=O)c1ccc(C=Cc2ccc(cc2)[N+]([O-])=O)cc1
ACDLabs 10.04[O-][N+](=O)c1ccc(cc1)\C=C\c2ccc(N(C)CCCCC(=O)O)cc2
FormulaC20 H22 N2 O4
NameN-(TRANS-4'-NITRO-4-STILBENYL)-N-METHYL-5-AMINO-PENTANOIC ACID;
5-[{4-[(E)-2-(4-NITROPHENYL)VINYL]PHENYL}(METHYL)AMINO]PENTANOIC ACID
ChEMBL
DrugBankDB08635
ZINCZINC000058650441
PDB chain2g2r Chain A Residue 1005 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2g2r The Effects of Antibodies on Stilbene Excited-State Energetics.
Resolution2.75 Å
Binding residue
(original residue number in PDB)
Y33 N35 Y95 V101
Binding residue
(residue number reindexed from 1)
Y33 N35 Y99 V106
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003823 antigen binding
Biological Process
GO:0002250 adaptive immune response
GO:0016064 immunoglobulin mediated immune response
Cellular Component
GO:0005576 extracellular region
GO:0019814 immunoglobulin complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:2g2r, PDBe:2g2r, PDBj:2g2r
PDBsum2g2r
PubMed17089439
UniProtP84751|HVM63_MOUSE Ig heavy chain Mem5 (Fragment)

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