Structure of PDB 2cl8 Chain B Binding Site BS01

Receptor Information

>2cl8 Chain B (length=128) Species: 10090 (Mus musculus)

QSCLPNWIMHGKSCYLFSFSGNSWYGSKRHCSQLGAHLLKIDNSKEFEFI
ESQTSSHRINAFWIGLSRNQSEGPWFWEDGSAFFPNSFQVRNAVPQESLL
HNCVWIHGSEVYNQICNTSSYSICEKEL

Ligand information

• Ligand ID: BGC
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-VFUOTHLCSA-N
• SMILES:
  OpenEye OEToolkits 1.7.6: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.370: OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
  CACTVS 3.370: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.7.6: C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 12.01: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-glucopyranose;
  beta-D-glucose;
  D-glucose;
  glucose
• ChEMBL: CHEMBL1614854
• DrugBank: DB02379
• ZINC: ZINC000003833800
• PDB chain: 2cl8 Chain C Residue 1

Receptor-Ligand Complex Structure

Structure summary

• PDB: 2cl8 Structure of the Fungal Beta-Glucan-Binding Immune Receptor Dectin-1: Implications for Function.
• Resolution: 2.8 Å
• Binding residue (original residue number in PDB): E243 L244
• Binding residue (residue number reindexed from 1): E127 L128
• Annotation score: 4

Gene Ontology

Molecular Function

• GO:0001872 (1->3)-beta-D-glucan binding

Biological Process

• GO:0071226 cellular response to molecule of fungal origin

External links

• PDB: RCSB:2cl8, PDBe:2cl8, PDBj:2cl8
• PDBsum: 2cl8
• PubMed: 17473009
• UniProt: Q6QLQ4|CLC7A_MOUSE C-type lectin domain family 7 member A (Gene Name=Clec7a)