Structure of PDB 2bru Chain B Binding Site BS01
Receptor Information
>2bru Chain B (length=364) Species:
562
(Escherichia coli) [
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HHHGRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDD
KAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQ
NPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAH
EFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTR
PEVKEQVQSMGAEFLELDMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK
PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIG
YTDLPGRLPTQSSQLYGTNLVNLLKLLCKEKDGNITVDFDDVVIRGVTVI
RAGEITWPAPPIQV
Ligand information
Ligand ID
NAD
InChI
InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
BAWFJGJZGIEFAR-NNYOXOHSSA-N
SMILES
Software
SMILES
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
Formula
C21 H27 N7 O14 P2
Name
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
ChEMBL
CHEMBL1234613
DrugBank
DB14128
ZINC
PDB chain
2bru Chain B Residue 1 [
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Receptor-Ligand Complex Structure
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PDB
2bru
Structure Determination of a Transient Complex by NMR Using Paramagnetic Distance Restraints - the Complex of the Soluble Domains of Escherichia Coli Transhydrogenase
Resolution
N/A
Binding residue
(original residue number in PDB)
R1120 S1122 Q1125 G1172 G1174 V1175 F1194 D1195 R1197 E1238 A1256 L1257
Binding residue
(residue number reindexed from 1)
R123 S125 Q128 G175 G177 V178 F197 D198 R200 E227 A245 L246
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
R1015 N1073 F1092 W1094 D1116 R1120 Q1125 D1128 S1131 Q1287
Catalytic site (residue number reindexed from 1)
R18 N76 F95 W97 D119 R123 Q128 D131 S134 Q276
Enzyme Commision number
7.1.1.1
: proton-translocating NAD(P)(+) transhydrogenase.
Gene Ontology
Molecular Function
GO:0016491
oxidoreductase activity
Biological Process
GO:1902600
proton transmembrane transport
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:2bru
,
PDBe:2bru
,
PDBj:2bru
PDBsum
2bru
PubMed
UniProt
P07001
|PNTA_ECOLI NAD(P) transhydrogenase subunit alpha (Gene Name=pntA)
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