Structure of PDB 1zlp Chain B Binding Site BS01

Receptor Information
>1zlp Chain B (length=285) Species: 3570 (Dianthus caryophyllus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KTTMHRLIEEHGSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGL
PDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELIS
AGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLV
ARTDARAPHGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTKGL
RIANMIEGGKTPLHTPEEFKEMGFHLIAHSLTAVYATARALVNIMKILKE
KGTTRDDLDQMATFSEFNELISLESWYEMESKFKN
Ligand information
Ligand IDGAQ
InChIInChI=1S/C5H10O2/c6-4-2-1-3-5-7/h4,7H,1-3,5H2
InChIKeyCNRGMQRNYAIBTN-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=CCCCCO
OpenEye OEToolkits 1.5.0C(CCO)CC=O
CACTVS 3.341OCCCCC=O
FormulaC5 H10 O2
Name5-HYDROXYPENTANAL
ChEMBL
DrugBank
ZINCZINC000001690994
PDB chain1zlp Chain B Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1zlp Crystal Structure of the Petal Death Protein from Carnation Flower.
Resolution2.7 Å
Binding residue
(original residue number in PDB)		Y68 C144 R179 I233
Binding residue
(residue number reindexed from 1)		Y41 C117 R152 I206
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) F64 S66 G67 Y68 D79 D107 D109 F134 E136 K142 C144 G145 H146 R179 E209 N231 T238 L240
Catalytic site (residue number reindexed from 1) F37 S39 G40 Y41 D52 D80 D82 F107 E109 K115 C117 G118 H119 R152 E182 N204 T211 L213
Enzyme Commision number 3.7.1.1: oxaloacetase.
4.1.3.-
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003824 catalytic activity
GO:0016740 transferase activity
GO:0016787 hydrolase activity
GO:0016829 lyase activity
GO:0030603 oxaloacetase activity
GO:0042803 protein homodimerization activity
GO:0046872 metal ion binding
GO:0047776 citramalate lyase activity
Biological Process
GO:0006107 oxaloacetate metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:1zlp, PDBe:1zlp, PDBj:1zlp
PDBsum1zlp
PubMed16342930
UniProtQ05957|PDP_DIACA Petal death protein (Gene Name=PDP)

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