Structure of PDB 1z2w Chain B Binding Site BS01
Receptor Information
>1z2w Chain B (length=182) Species:
10090
(Mus musculus) [
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MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLK
TLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLA
LLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSF
VLMDIQASTVVTYVYQLIGDDVKVERIEYKKS
Ligand information
Ligand ID
MN
InChI
InChI=1S/Mn/q+2
InChIKey
WAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mn+2]
CACTVS 3.341
[Mn++]
Formula
Mn
Name
MANGANESE (II) ION
ChEMBL
DrugBank
DB06757
ZINC
PDB chain
1z2w Chain B Residue 701 [
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Receptor-Ligand Complex Structure
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PDB
1z2w
Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer assembly
Resolution
2.0 Å
Binding residue
(original residue number in PDB)
D8 H10 N39 H117
Binding residue
(residue number reindexed from 1)
D8 H10 N39 H117
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0005515
protein binding
GO:0046872
metal ion binding
Biological Process
GO:0006896
Golgi to vacuole transport
GO:0015031
protein transport
GO:0032456
endocytic recycling
GO:0042147
retrograde transport, endosome to Golgi
Cellular Component
GO:0005737
cytoplasm
GO:0005768
endosome
GO:0005829
cytosol
GO:0010008
endosome membrane
GO:0016020
membrane
GO:0030904
retromer complex
GO:0030906
retromer, cargo-selective complex
GO:0043231
intracellular membrane-bounded organelle
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:1z2w
,
PDBe:1z2w
,
PDBj:1z2w
PDBsum
1z2w
PubMed
15965486
UniProt
Q9QZ88
|VPS29_MOUSE Vacuolar protein sorting-associated protein 29 (Gene Name=Vps29)
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