Structure of PDB 1yuh Chain B Binding Site BS01

Receptor Information
>1yuh Chain B (length=218) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVQFQQSGAELVKPGASVKLSCKASGYTFTSYLMHWIKQRPGRGLEWIGR
IDPNNVVTKFNEKFKSKATLTVDKPSSTAYMELSSLTSEDSAVYYCARYA
YCRPMDYWGQGTTVTVSSAATTPPSVYPLAPGSAAQTNSMVTLGCLVKGY
FPEPVTVTWNSGALSSGVHTFPAVLQSDLYTLSSSVTVPASTWPSGTVTC
NVAHPASSTAVDKKIVPR
Ligand information
Ligand IDNP
InChIInChI=1S/C14H18N2O6/c17-12-6-5-10(8-11(12)16(21)22)9-13(18)15-7-3-1-2-4-14(19)20/h5-6,8,17H,1-4,7,9H2,(H,15,18)(H,19,20)
InChIKeyXAYGJFACOIKJCT-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=[N+]([O-])c1cc(ccc1O)CC(=O)NCCCCCC(=O)O
OpenEye OEToolkits 1.5.0c1cc(c(cc1CC(=O)NCCCCCC(=O)O)[N+](=O)[O-])O
CACTVS 3.341OC(=O)CCCCCNC(=O)Cc1ccc(O)c(c1)[N+]([O-])=O
FormulaC14 H18 N2 O6
Name4-HYDROXY-3-NITROPHENYLACETYL-EPSILON-AMINOCAPROIC ACID
ChEMBL
DrugBank
ZINC
PDB chain1yuh Chain B Residue 996 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1yuh Structural analysis of affinity maturation: the three-dimensional structures of complexes of an anti-nitrophenol antibody.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		L33 R50 Y99 A100 Y101
Binding residue
(residue number reindexed from 1)		L33 R50 Y99 A100 Y101
Annotation score1
External links