Structure of PDB 1x7d Chain B Binding Site BS01
Receptor Information
>1x7d Chain B (length=339) Species:
303
(Pseudomonas putida) [
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TYFIDVPTMSDLVHDIGVAPFIGELAAALRDDFKRWQAFDKSARVASHSE
VGVIELMPVADKSRYAFKYVNGHPANTARNLHTVMAFGVLADVDSGYPVL
LSELTIATALRTAATSLMAAQALARPNARKMALIGNGAQSEFQALAFHKH
LGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTV
TADKAYATIITPDMLEPGMHLNAVGGDCPGKTELHADVLRNARVFVEYEP
QTRIEGEIQQLPADFPVVDLWRVLRGETEGRQSDSQVTVFDSVGFALEDY
TVLRYVLQQAEKRGMGTKIDLVPWVEDDPKDLFSHTRGR
Ligand information
Ligand ID
ORN
InChI
InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m0/s1
InChIKey
AHLPHDHHMVZTML-BYPYZUCNSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
C(C[C@@H](C(=O)O)N)CN
CACTVS 3.370
NCCC[CH](N)C(O)=O
CACTVS 3.370
NCCC[C@H](N)C(O)=O
ACDLabs 12.01
O=C(O)C(N)CCCN
OpenEye OEToolkits 1.7.6
C(CC(C(=O)O)N)CN
Formula
C5 H12 N2 O2
Name
L-ornithine
ChEMBL
CHEMBL446143
DrugBank
DB00129
ZINC
ZINC000001532530
PDB chain
1x7d Chain A Residue 1102 [
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Receptor-Ligand Complex Structure
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PDB
1x7d
Ornithine Cyclodeaminase: Structure, Mechanism of Action, and Implications for the u-Crystallin Family
Resolution
1.6 Å
Binding residue
(original residue number in PDB)
R45 M58 K69 V71 N72 V85 R112 D228 V294
Binding residue
(residue number reindexed from 1)
R44 M57 K68 V70 N71 V84 R111 D227 V293
Annotation score
5
Enzymatic activity
Catalytic site (original residue number in PDB)
E56 D228
Catalytic site (residue number reindexed from 1)
E55 D227
Enzyme Commision number
4.3.1.12
: ornithine cyclodeaminase.
Gene Ontology
Molecular Function
GO:0000166
nucleotide binding
GO:0008473
ornithine cyclodeaminase activity
GO:0016829
lyase activity
Biological Process
GO:0008652
amino acid biosynthetic process
GO:0055129
L-proline biosynthetic process
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1x7d
,
PDBe:1x7d
,
PDBj:1x7d
PDBsum
1x7d
PubMed
15518536
UniProt
Q88H32
|OCD_PSEPK Ornithine cyclodeaminase (Gene Name=ocd)
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