Structure of PDB 1vp4 Chain B Binding Site BS01

Receptor Information
>1vp4 Chain B (length=416) Species: 243274 (Thermotoga maritima MSB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HHHMVVNLEGKISKIGQNMKSSIIREILKFAADKDAISFGGGVPDPETFP
RKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDE
DNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVV
VPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEK
RKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFS
KVLAPGLRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDL
LEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEG
FDTWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIK
RLREVVLEYGKEKHLL
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain1vp4 Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1vp4 Crystal structure of Aminotransferase, putative (TM1131) from Thermotoga maritima at 1.82 A resolution
Resolution1.82 Å
Binding residue
(original residue number in PDB)		G105 S106 Q107 Y131 N187 D215 P217 Y218 T245 S247 K248 R255
Binding residue
(residue number reindexed from 1)		G108 S109 Q110 Y134 N190 D218 P220 Y221 T248 S250 K251 R258
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008483 transaminase activity
GO:0030170 pyridoxal phosphate binding
Biological Process
GO:0009058 biosynthetic process
GO:1901605 alpha-amino acid metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:1vp4, PDBe:1vp4, PDBj:1vp4
PDBsum1vp4
PubMed
UniProtQ9X0L5

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