Structure of PDB 1rzo Chain B Binding Site BS01

Receptor Information
>1rzo Chain B (length=262) Species: 3988 (Ricinus communis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ADVCMDPEPIVRIVGRNGLCVDVTGEEFFDGNPIQLWPCKSNTDWNQLWT
LRKDSTIRSNGKCLTISKSSPRQQVVIYNCSTATVGATRWQIWDNRTIIN
PRSGLVLAATSGNSGTKLTVQTNIYAVSQGWLPTNNTQPFVTTIVGLYGM
CLQANSGKVWLEDCTSEKAEQQWALYADGSIRPQQNRDNCLTTDANIKGT
VVKILSCGPASSGQRWMFKNDGTILNLYNGLVLDVRRSDPSLKQIIVHPF
HGNLNQIWLPLF
Ligand information
Ligand IDGAL
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3+,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-FPRJBGLDSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@H]1O
OpenEye OEToolkits 1.7.2C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
OpenEye OEToolkits 1.7.2C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
FormulaC6 H12 O6
Namebeta-D-galactopyranose;
beta-D-galactose;
D-galactose;
galactose
ChEMBLCHEMBL300520
DrugBank
ZINCZINC000002597049
PDB chain1rzo Chain B Residue 5003 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1rzo Structure-function investigation complex of Agglutinin from Ricinus communis with galactoaza
Resolution2.63 Å
Binding residue
(original residue number in PDB)		D2022 T2024 G2025 E2026 Q2035 W2037 K2040 N2046
Binding residue
(residue number reindexed from 1)		D22 T24 G25 E26 Q35 W37 K40 N46
Annotation score4
Enzymatic activity
Enzyme Commision number 3.2.2.22: rRNA N-glycosylase.
External links
PDB RCSB:1rzo, PDBe:1rzo, PDBj:1rzo
PDBsum1rzo
PubMed
UniProtP06750|AGGL_RICCO Agglutinin

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