Structure of PDB 1nov Chain B Binding Site BS01

Receptor Information

>1nov Chain B (length=309) Species: 12288 (Nodamura virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

NMLKMSAPGLDFLKCAFASPDFSTDPGKGIPDKFQGLVLPKKHCLTQSIT
FTPGKQTMLLVAPIPGIACLKAEANVGASFSGVPLASVEFPGFDQLFGTS
ATDTAANVTAFRYASMAAGVYPTSNLMQFAGSIQVYKIPLKQVLNSYSQT
VATVPPTNLAQNTIAIDGLEALDALPNNNYSGSFIEGCYSQSVCNEPEFE
FHPIMEGYASVPPANVTNAQASMFTNLTFSGARYTGLGDMDAIAILVTTP
TGAVNTAVLKVWACVEYRPNPNSTLYEFARESPANDEYALAAYRKIARDI
PIAVACKDN

Ligand information

>1nov Chain E (length=17) Species: 12288 (Nodamura virus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

ATFWERVRSILKSGLNF

Receptor-Ligand Complex Structure

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Structure summary

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PDB	1nov Resolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals.
Resolution	3.5 Å
Binding residue (original residue number in PDB)	K68 A72 D75 F76 Q242 K349 I350 I354 D362 N363
Binding residue (residue number reindexed from 1)	K14 A18 D21 F22 Q191 K295 I296 I300 D308 N309

Enzymatic activity

Enzyme Commision number

3.4.23.44: nodavirus endopeptidase.

Gene Ontology

	Molecular Function
GO:0004190	aspartic-type endopeptidase activity

	Biological Process
GO:0006508	proteolysis

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Molecular Function

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Biological Process

External links

PDB	RCSB:1nov, PDBe:1nov, PDBj:1nov
PDBsum	1nov
PubMed	15299863
UniProt	P12871\|CAPSD_NODAM Capsid protein alpha (Gene Name=alpha)

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