Structure of PDB 1nkk Chain B Binding Site BS01
Receptor Information
>1nkk Chain B (length=226) Species:
10359
(Human betaherpesvirus 5) [
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EQQSQAVAPVYVGGFLARYDQSPDEARLLLPRDVVEHWLHAQVALPLNIN
HDDTAVVGHVAAMQSVRDGLFCLGCVTSPRFLEIVRRASEKSELVSRGPV
SPLQPDKVVEFLSGSYAGLSLSSRRCDETTPFKHVALCSVGRRRGTLAVY
GRDPEWVTQRFPDLTAADRDGLRAQWQRCGGDPFRSDSYGLLGNSVDALY
IRERLPKLRYDKQLVGVTERESYVKA
Ligand information
>1nkk Chain F (length=4) [
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VDNA
Receptor-Ligand Complex Structure
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PDB
1nkk
Structural and Biochemical Studies of Inhibitor Binding to Human Cytomegalovirus Protease
Resolution
2.6 Å
Binding residue
(original residue number in PDB)
R331 H363 S432 L433 S434 S435 R436 R437 G464 R465
Binding residue
(residue number reindexed from 1)
R27 H51 S120 L121 S122 S123 R124 R125 G141 R142
Enzymatic activity
Catalytic site (original residue number in PDB)
H363 S432 S434 H457 R465 R466
Catalytic site (residue number reindexed from 1)
H51 S120 S122 H134 R142 R143
Enzyme Commision number
3.4.21.97
: assemblin.
Gene Ontology
Molecular Function
GO:0004252
serine-type endopeptidase activity
Biological Process
GO:0006508
proteolysis
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Molecular Function
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Biological Process
External links
PDB
RCSB:1nkk
,
PDBe:1nkk
,
PDBj:1nkk
PDBsum
1nkk
PubMed
12549906
UniProt
P16753
|SCAF_HCMVA Capsid scaffolding protein (Gene Name=UL80)
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